• PAUP*

  • Referenced in 57 articles [sw07834]
  • formats. The influence of high-speed computer analysis of molecular, morphological and/or behavioral data ... combinability of data and permutation tests for nonrandomness of data structure. These, along with many ... MacClade 3 use a common data file format (NEXUS), allowing easy interchange of data between...
  • ALPS

  • Referenced in 19 articles [sw08907]
  • development is centered on common XML and HDF5 data formats, libraries to simplify and speed ... include the use of HDF5 for binary data, evaluation tools in Python, support...
  • HTSeq

  • Referenced in 8 articles [sw16898]
  • scripts. HTSeq offers parsers for many common data formats in HTS projects, as well...
  • Pathway Commons

  • Referenced in 9 articles [sw23072]
  • publicly available pathway data from multiple organisms. Pathway Commons provides a web-based interface that ... pathways from multiple sources represented in a common language, a download site that provides integrated ... access all data. Database providers can share their pathway data via a common repository. Pathways ... data available in standard formats. Pathway Commons currently contains data from nine databases with over...
  • FES

  • Referenced in 5 articles [sw18532]
  • costly, and there is no common data format for representing timetabling problem instances. In this...
  • BioJava

  • Referenced in 13 articles [sw05334]
  • read and write sequence data in a variety of common formats and communicate with Ensembl...
  • Change-O

  • Referenced in 2 articles [sw34307]
  • Change-O tools utilize a common data format, which enables the seamless integration of multiple...
  • Astropy

  • Referenced in 46 articles [sw15603]
  • Virtual Observatory (VO) tables, and common ASCII table formats, unit and physical quantity conversions, physical ... representing gridded as well as tabular data, and a framework for cosmological transformations and conversions...
  • STATGRAPHICS

  • Referenced in 10 articles [sw00912]
  • read data from text files, Excel files, or other common formats. The calculations are performed ... monthly subscription. Subscribers may enter their own data, upload data from their own computers...
  • FRGC

  • Referenced in 46 articles [sw13805]
  • complexity of the FRGC. Previous face recognition data sets have been restricted to still images ... distribution of experiments in a common format, recording of the raw results of an experiment...
  • MDAnalysis

  • Referenced in 9 articles [sw17696]
  • powerful NumPy package to expose trajectory data as fast and efficient NumPy arrays ... systems of millions of particles. Many common file formats of simulation packages including CHARMM, Gromacs ... Amber, and NAMD and the Protein Data Bank format can be read and written. Atoms...
  • SGRAPH

  • Referenced in 1 article [sw26151]
  • that manipulates a wide range of data formats. SGRAPH was intended to be a tool ... interaction with the data. SGRAPH supports common data formats, such as SAC, SEED, GSE, ASCII...
  • Harry

  • Referenced in 1 article [sw15426]
  • data sets of strings. Harry supports common data formats and thus can interface with analysis...
  • Radx

  • Referenced in 1 article [sw35894]
  • provide translation between common radar data formats. The software is open source and freely available...
  • NetCDF

  • Referenced in 30 articles [sw04611]
  • network Common Data Form) is a set of interfaces for array-oriented data access ... freely-distributed collection of data access libraries for C, Fortran, C++, Java, and other languages ... netCDF libraries support a machine-independent format for representing scientific data. Together, the interfaces, libraries...
  • GiD

  • Referenced in 55 articles [sw07799]
  • been designed to cover all the common needs in the numerical simulations field from ... geometrical modeling, effective definition of analysis data, meshing, data transfer to analysis software, as well ... read and write data in an unlimited number of formats. GiD’s input and output...
  • MDSpackage

  • Referenced in 14 articles [sw14423]
  • defining data for Cox rings and Mori dream spaces in a suitable format ... application of the package, we determine the common Cox ring for the symplectic resolutions...
  • alchemlyb

  • Referenced in 1 article [sw36621]
  • includes functions for parsing data from formats common to existing MD engines, subsampling these data...
  • isoreader

  • Referenced in 1 article [sw38390]
  • Files. Interface to the raw data file formats commonly encountered in scientific disciplines that make...
  • NSPCG

  • Referenced in 35 articles [sw00636]
  • package is to provide a common modular structure for research on iterative methods for nonsymmetric ... several different matrix data storage schemes. These sparse data formats allow matrices with a wide...