• PROFIL/BIAS

  • Referenced in 134 articles [sw00733]
  • PROFIL (Programmer’s Runtime Optimized Fast Interval Library) is a C++ class library supporting ... most commonly needed interval and real operations in a user friendly way. The supported data ... matrices of these types, and complex numbers. PROFIL is based on BIAS (Basic Interval Arithmetic...
  • PROFEAT

  • Referenced in 14 articles [sw16924]
  • interaction profiles. PROFEAT (Protein Features) is a web server for computing commonly-used structural...
  • UNAFold

  • Referenced in 8 articles [sw12671]
  • melting simulations, the package computes entire melting profiles, not just melting temperatures. UV absorbance ... computed using common formats. Similarly, a variety of melting profile plots is created when appropriate...
  • CorrT

  • Referenced in 6 articles [sw26432]
  • gene expression profiling, where all genes are believed to affect a common disease marker...
  • DL_MONTE

  • Referenced in 4 articles [sw37767]
  • competing polymorphs; various commonly-used methods for evaluating free energy profiles along transition pathways (including...
  • BATMAN

  • Referenced in 2 articles [sw34836]
  • metabolomics to obtain metabolite profiles in complex biological mixtures. Common methods used to assign...
  • INMEX

  • Referenced in 4 articles [sw26782]
  • pathways, or expression profile visualization. INMEX has built-in support for common gene/metabolite identifiers...
  • LIBOPT

  • Referenced in 9 articles [sw04011]
  • used for testing, comparing, and profiling solvers on problems belonging to various collections. These collections ... sense that their problems can have common features that differ from one collection...
  • RCPmod

  • Referenced in 0 articles [sw16102]
  • package RCPmod. Identifies regions of common (species) profiles (RCPs), possibly when sampling artefacts are present...
  • Gene Resource Locator

  • Referenced in 3 articles [sw37100]
  • loci sharing common exons, 8091 alternatively spliced transcript groups, 10 801 expression-profile groups...
  • ompP

  • Referenced in 2 articles [sw26769]
  • profiling tool for OpenMP applications. ompP’s profiling report becomes available immediately after program termination ... such as overhead analysis and detection of common inefficiency situations (called performance properties...
  • carl

  • Referenced in 4 articles [sw29181]
  • confidence intervals using the (generalized or profile) likelihood ratio as a test statistic ... computing technology, it has become increasingly common that a simulator (or generative model) is used...
  • ARSyN

  • Referenced in 2 articles [sw09280]
  • multifactorial time course microarray experiments. Transcriptomic profiling experiments that aim to the identification of responsive ... genes in specific biological conditions are commonly set up under defined experimental designs that...
  • ProSOM

  • Referenced in 3 articles [sw13019]
  • based on unsupervised clustering of DNA physical profiles. Motivation: More and more genomes are being ... challenging problem, it is not yet a common practice to integrate transcription start site prediction ... experimental work. Results: Comparing the average structural profile based on base stacking energy of transcribed...
  • MicrobiomeAnalyst

  • Referenced in 1 article [sw26776]
  • revolutionized microbiome research by enabling high-throughput profiling of the genetic contents of microbial communities ... common data outputs produced from microbiome studies. MicrobiomeAnalyst contains four modules - the Marker Data Profiling...
  • rSW-seq

  • Referenced in 3 articles [sw17971]
  • genomic features, including the DNA copy number profile of a cancer genome. A robust ... alterations in a complex configuration, which are commonly observed in the human cancer genome ... datasets. We also compare the sequencing-based profiles to microarray-based results. Conclusion: We propose...
  • ArrayCluster

  • Referenced in 4 articles [sw20488]
  • visualization and module finder on gene expression profiles. One of the significant challenges in gene ... large number of genes. Application of commonly used clustering methods to such a dataset however...
  • MPAgenomics

  • Referenced in 1 article [sw15365]
  • genomic data. MPAgenomics provides wrappers from commonly used packages to streamline their repeated manipulation, offering ... pipeline. The segmentation of successive multiple profiles is performed with an automatic choice of parameters...
  • PsN-Toolkit

  • Referenced in 2 articles [sw16112]
  • methods: the Bootstrap, the Jackknife, Log-likelihood Profiling, Case-deletion Diagnostics and Stepwise Covariate Model ... cooperate and with an emphasis on common structures for workflow and result handling. Parallel execution ... Bootstrap, the Jackknife, Log-likelihood Profiling, Case-deletion Diagnostics and Stepwise Covariate Model building...
  • SPRING

  • Referenced in 1 article [sw34137]
  • expression data. Motivation: Single-cell gene expression profiling technologies can map the cell states ... organism. As these technologies become more common, there is a need for computational tools...