• avida

  • Referenced in 18 articles [sw17260]
  • random mutations, adapting to a complex information-rich landscape...
  • Fastsg

  • Referenced in 5 articles [sw18350]
  • Library for Sparse Grids. In a complex processor landscape dominated by multi-and many-core...
  • FARSITE

  • Referenced in 21 articles [sw31762]
  • fire use for resource benefit across the landscape. It is designed for users familiar with ... associated terminology. Because of its complexity, only users with the proper fire behavior training...
  • miRNet

  • Referenced in 1 article [sw29355]
  • allows researchers to easily navigate the complex landscape of miRNA–target interactions to obtain deep...
  • isONclust

  • Referenced in 1 article [sw28730]
  • central to the study of complex isoform landscapes in many organisms. However, current de novo...
  • ASTALAVISTA

  • Referenced in 3 articles [sw17177]
  • tools to address ‘complex’ AS events. ASTALAVISTA (alternative splicing transcriptional landscape visualization tool) employs...
  • PAIsing

  • Referenced in 1 article [sw28327]
  • simulation of systems with complex free-energy landscapes. It is a hybrid method, combining importance...
  • MITIE

  • Referenced in 1 article [sw34895]
  • well as the observed complexity of the transcriptional landscape, pose profound computational challenges for transcriptome...
  • BluePyOpt

  • Referenced in 0 articles [sw37639]
  • global nonlinear optimisation problem with a complex fitness landscape, requiring numerical techniques to find suitable...
  • flacco

  • Referenced in 2 articles [sw21196]
  • which can be used for an Exploratory Landscape Analysis (ELA) of single-objective continuous optimization ... Those features are able to quantify rather complex properties, such as the global structure, separability...
  • VisExpA

  • Referenced in 1 article [sw31381]
  • complex networks and it allows interpreting the network topology as a landscape, making...
  • KineticPy

  • Referenced in 1 article [sw31386]
  • ergodicity. Energy landscapes are a powerful tool for describing the kinetics of complex systems ... probabilities of every basin in an energy landscape (or enthalpy landscape), taking advantage...
  • FFTbor

  • Referenced in 3 articles [sw23803]
  • computational search for RNA conformational switches. Using complex roots of unity and the Fast Fourier ... speed and the ruggedness of the energy landscape, and to predict the location of riboswitch...
  • VATRAM

  • Referenced in 2 articles [sw18809]
  • trends that are changing the landscape of readmapping: First, new sequencing technologies provide very long ... single string over ACGT, but as a complex object containing these variants. Most existing read...
  • Rnall

  • Referenced in 1 article [sw23119]
  • algorithm for predicting RNA local secondary structural landscape in genomes. BACKGROUND: The information ... genome scale due to high computational complexity. METHODS: We developed a new computer package Rnall ... further introduced the concept of energy landscape for illustrating RNA LSS, which may facilitate...
  • SHGO

  • Referenced in 1 article [sw26954]
  • black and grey box optimisation problems. This complex is built up using sampling points within ... especially suitable to applications such as energy landscape exploration. SHGO was initially developed...
  • mcmcabn

  • Referenced in 1 article [sw31038]
  • three priors: a prior controlling for structure complexity from Koivisto and Sood (2004) landscape of high scoring structures. It allows...
  • GAMES

  • Referenced in 1 article [sw17427]
  • methods have the potential for changing the landscape of biomedical science, but at the same ... different approaches. Overall GAMES enables an effective complexity reduction in large-scale DNA-sequencing projects...
  • Expertus

  • Referenced in 0 articles [sw23240]
  • emerging technology paradigm that revolutionizes the computing landscape by providing on-demand delivery of software ... clouds remains a challenge due to associated complexities and non-trivial implications. The natural...
  • Expokit

  • Referenced in 179 articles [sw00258]
  • Expokit provides a set of routines aimed at...