• ESLpred

  • Referenced in 20 articles [sw22403]
  • eukaryotic proteins using dipeptide composition and PSI-BLAST. Automated prediction of subcellular localization of proteins ... existing subcellular localization prediction methods are based on either amino acid composition or N-terminal ... vector machine (SVM) has been used to predict the subcellular location of eukaryotic proteins from ... overall prediction accuracy of SVM modules based on amino acid composition, physico-chemical properties, dipeptide...
  • iNuc-PseKNC

  • Referenced in 31 articles [sw16607]
  • predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition. Motivation: Nucleosome ... predictor called ‘iNuc-PseKNC’ was developed for predicting nucleosome positioning in Homo sapiens, Caenorhabditis elegans ... feature-vector called ‘pseudo k-tuple nucleotide composition’, into which six DNA local structural properties ... success rates achieved by iNuc-PseKNC in predicting the nucleosome positioning of the aforementioned three...
  • GOASVM

  • Referenced in 6 articles [sw22445]
  • Chou’s pseudo-amino acid composition. Prediction of protein subcellular localization is an important ... form of Chou’s pseudo-amino acid composition. The method first selects a subset ... useful homologous information, GOASVM can achieve a prediction accuracy of 72.2% on a new independent...
  • LSTM

  • Referenced in 24 articles [sw03373]
  • keyword spotting, music composition, attentive vision, protein analysis, stock market prediction, and many other sequence...
  • MultiLoc

  • Referenced in 11 articles [sw35402]
  • MultiLoc: prediction of protein subcellular localization using N-terminal targeting sequences, sequence motifs and amino ... acid composition. Motivation: Functional annotation of unknown proteins is a major goal in proteomics ... annotation is the prediction of a protein’s subcellular localization. Numerous prediction techniques have been ... predicting subcellular localization, which integrates N-terminal targeting sequences, amino acid composition and protein sequence...
  • PseAAC

  • Referenced in 30 articles [sw16469]
  • acid composition. The pseudo amino acid (PseAA) composition can represent a protein sequence ... been widely applied for improving the prediction quality for various protein attributes. However, dealing with ... problems may need different kinds of PseAA composition. Here, we present a web-server called...
  • iSNO-PseAAC

  • Referenced in 39 articles [sw22446]
  • iSNO-PseAAC: predict cysteine S-nitrosylation sites in proteins by incorporating position specific amino acid ... propensity into pseudo amino acid composition. Posttranslational modifications (PTMs) of proteins are responsible for sensing ... general form of pseudo amino acid composition (PseAAC). The predictor was implemented using the conditional ... involved during the process of developing the prediction method. It is anticipated that iSNO-PseAAC...
  • iNitro-Tyr

  • Referenced in 22 articles [sw22450]
  • prediction of nitrotyrosine sites in proteins with general pseudo amino acid composition. Nitrotyrosine...
  • GPCR-CA

  • Referenced in 35 articles [sw25949]
  • cellular automaton image approach for predicting G-protein-coupled receptor functional classes. Given an uncharacterized ... proteins through their pseudo amino acid composition (Chou, K.C. Proteins 2001, 43, 246). GPCR ... layer predictor: the first layer prediction engine is for identifying a query protein as GPCR...
  • Nuc-ploc

  • Referenced in 14 articles [sw16471]
  • server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM. The life processes...
  • Quat-2L

  • Referenced in 15 articles [sw22469]
  • Quat-2L: a web-server for predicting protein quaternary structural attributes. By hybridizing the functional ... acid composition approaches, a 2-layer predictor called ”Quat-2L” was developed for predicting...
  • Kpc-toolbox

  • Referenced in 6 articles [sw08537]
  • queueing models for performance prediction and are compositional with Markov models in general. PHs include...
  • GPCR-2L

  • Referenced in 22 articles [sw22409]
  • GPCR-2L: predicting G protein-coupled receptors and their types by hybridizing two different modes ... pseudo amino acid compositions. G protein-coupled receptors (GPCRs) are among the most frequent targets ... different modes of pseudo-amino acid composition (PseAAC): the functional domain PseAAC ... layer predictor: the 1st layer prediction engine is to identify a query protein as GPCR...
  • iLoc-lncRNA

  • Referenced in 8 articles [sw30465]
  • iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC ... based bioinformatics tool called ‘iLoc-lncRNA’ to predict the subcellular locations of LncRNAs by incorporating ... general PseKNC (Pseudo K-tuple Nucleotide Composition) via the binomial distribution approach. Rigorous jackknife tests...
  • MultiP-SChlo

  • Referenced in 8 articles [sw18832]
  • label protein subchloroplast localization prediction with Chous pseudo amino acid composition and a novel multi ... proteins. There have existed a few computational prediction methods for protein subchloroplast localization. However, these...
  • PredLactamase

  • Referenced in 12 articles [sw16470]
  • Prediction of β-lactamase and its class by Chou’s pseudo-amino acid composition ... based two level β-lactamases protein prediction method, which differentiate β-lactamases from ... lactamases at first level and then classify predicted β-lactamases into different classes at second ... different input vectors namely simple amino acid composition, Type-1 and Type-2 Chou...
  • PseAAC-General

  • Referenced in 16 articles [sw22430]
  • acid composition (PseAAC) has been widely used to represent protein sequences in predicting protein structural...
  • SecretP

  • Referenced in 14 articles [sw22470]
  • composition (PseAAC), two support vector machine (SVM)-based ternary classifiers are developed to predict secreted...
  • SubChlo

  • Referenced in 11 articles [sw22431]
  • SubChlo: predicting protein subchloroplast locations with pseudo-amino acid composition and the evidence-theoretic ... algorithm, we developed a method for predicting the protein subchloroplast locations. This is the first...
  • GlycoMod

  • Referenced in 2 articles [sw14030]
  • software tool designed to find all possible compositions of a glycan structure from its experimentally ... program can be used to predict the composition of any glycoprotein-derived oligosaccharide comprised ... with a derivatised reducing terminus. The composition of a glycan attached to a peptide ... experimentally determined masses against all the predicted protease-produced peptides (including any post-translational modifications...