• iRSpot-PseDNC

  • Referenced in 65 articles [sw22437]
  • PseDNC: identify recombination spots with pseudo dinucleotide composition. Meiotic recombination is an important biological process ... novel feature vector, the so-called ’pseudo dinucleotide composition’ (PseDNC), into which six local...
  • ESLpred

  • Referenced in 20 articles [sw22403]
  • acid composition or N-terminal characteristics of the proteins. In this paper, support vector machine ... their different features such as amino acid composition, dipeptide composition and physico-chemical properties ... modules based on amino acid composition or physico-chemical properties. In addition, PSI-BLAST ... consisted of an input vector of 458 dimensions (400 dipeptide compositions, 33 properties, 20 amino...
  • PredLactamase

  • Referenced in 12 articles [sw16470]
  • Chou’s pseudo-amino acid composition and support vector machine. β-Lactam class of antibiotics ... performance of different input vectors namely simple amino acid composition, Type-1 and Type...
  • iPro54-PseKNC

  • Referenced in 32 articles [sw22411]
  • prokaryote with pseudo k-tuple nucleotide composition. The σ(54) promoters are unique in prokaryotic ... novel feature vector called ’pseudo k-tuple nucleotide composition’, which was further optimized...
  • iNuc-PseKNC

  • Referenced in 31 articles [sw16607]
  • genomes with pseudo k-tuple nucleotide composition. Motivation: Nucleosome positioning participates in many cellular activities ... novel feature-vector called ‘pseudo k-tuple nucleotide composition’, into which six DNA local structural...
  • PFRES

  • Referenced in 6 articles [sw26875]
  • using the PSI-BLAST profile-based composition vector and information extracted from the secondary structure...
  • Exp.Open

  • Referenced in 10 articles [sw07702]
  • state machines, using either synchronization vectors, or parallel composition, hiding, renaming, and cut operators from...
  • iSS-PseDNC

  • Referenced in 16 articles [sw22438]
  • PseDNC: identifying splicing sites using pseudo dinucleotide composition. In eukaryotic genes, exons are generally interrupted ... formulated by a novel feature-vector called ”pseudo dinucleotide composition” (PseDNC) into which...
  • SecretP

  • Referenced in 14 articles [sw22470]
  • Chou’s pseudo-amino acid composition (PseAAC), two support vector machine (SVM)-based ternary classifiers...
  • DYNA3D

  • Referenced in 106 articles [sw17036]
  • solids and structures. The code is fully vectorized and is available on several computer platforms ... range of material behavior, including elasticity, plasticity, composites, thermal effects, and rate dependence. In addition...
  • DiffSharp

  • Referenced in 95 articles [sw16033]
  • derivatives, and matrix-free Hessian- and Jacobian-vector products) is applied using higher-order functions ... language including control flow. DiffSharp allows composition of differentiation using nested forward and reverse...
  • SETL

  • Referenced in 28 articles [sw36325]
  • field, by allowing direct manipulation of large composite objects, considerably more complex than the integers ... structured lists as data objects, APL introduces vectors and matrices, and SETL introduces the objects ... maps. The direct availability of these abstract, composite objects, and of powerful mathematical operations upon...
  • PseKNC

  • Referenced in 31 articles [sw22436]
  • oligonucleotide composition, or pseudo K-tuple nucleotide composition (PseKNC), can be used to represent ... sequence with a discrete model or vector yet still keep considerable sequence order information, particularly...
  • LSTM

  • Referenced in 37 articles [sw03373]
  • continuous internal states), feedforward networks and Support Vector Machines (no internal states ... handwriting recognition, speech recognition, keyword spotting, music composition, attentive vision, protein analysis, stock market prediction...
  • PseAAC-Builder

  • Referenced in 25 articles [sw22404]
  • amino acid compositions. The pseudo-amino acid composition has been widely used to convert complicated ... various lengths to fixed length digital feature vectors while keeping considerable sequence order information. However ... modes of Chou’s pseudo-amino acid composition in a much more efficient and flexible...
  • iMiRNA-PseDPC

  • Referenced in 10 articles [sw22425]
  • precursor identification with a pseudo distance-pair composition approach. A microRNA (miRNA) is a small ... novel feature vector called ”pseudo distance-pair composition” (PseDPC) with 10 types of structure statuses...
  • Acalpred

  • Referenced in 5 articles [sw16757]
  • derived from g-gap dipeptide compositions. And support vector machine was utilized to establish...
  • iCTX-Type

  • Referenced in 21 articles [sw22440]
  • dimensional) general pseudoamino acid composition, followed by the feature optimization procedure to reduce the sample ... representation from 400-D to 50-D vector. The overall success rate achieved by iCTX...
  • iMethyl-PseAAC

  • Referenced in 21 articles [sw22443]
  • Methylation Sites via a Pseudo Amino Acid Composition Approach. Before becoming the native proteins during ... sample was formulated by a 346-dimensional vector, formed by incorporating its physicochemical, sequence evolution ... general form of pseudo amino acid composition. It was observed by the rigorous jackknife test...
  • PPA

  • Referenced in 1 article [sw38242]
  • representing individual brain connectomes by compositional vectors building on a basis system of fiber bundles...