• bootlib

  • Referenced in 426 articles [sw40642]
  • David Hinkley. Bootstrap methods are computer-intensive methods of statistical analysis using simulation to obtain...
  • spBayes

  • Referenced in 365 articles [sw10160]
  • such models involves computationally intensive Markov chain Monte Carlo (MCMC) methods whose efficiency depends upon ... package, spBayes, built upon the R statistical computing platform that implements a generalized template encompassing...
  • RAxML

  • Referenced in 44 articles [sw07716]
  • large phylogenetic trees with statistical methods is computationally intensive. We recently introduced simple heuristics which...
  • bayesm

  • Referenced in 66 articles [sw06787]
  • methods stemming from prior exposure to econometrics. This can be overcome by an intense course ... primarily due to the emphasis on statistical computing. This is facilitated by our R package ... bayesm, which provides efficient implementation of advanced methods and models...
  • PSMIX

  • Referenced in 5 articles [sw13670]
  • practice. However, these Bayesian methods demand intensive computation resources and may run into convergence problem ... package based on maximum likelihood method using expectation-maximization algorithm, for inference of population stratification...
  • waLBerla

  • Referenced in 21 articles [sw01472]
  • computing and communication intensive codes like free surface lattice Boltzmann. This method is used...
  • HMMER

  • Referenced in 19 articles [sw10514]
  • probabilistic methods. Previously, HMMER has mainly been available only as a computationally intensive UNIX command ... database searches return within a few seconds. Methods are available for searching either a single...
  • Elastix

  • Referenced in 19 articles [sw11747]
  • elastix: A Toolbox for Intensity-Based Medical Image Registration. Medical image registration is an important ... from different modalities (e.g., magnetic resonance and computed tomography), different time points (e.g., follow ... population studies). A large number of methods for image registration are described in the literature ... developed elastix, a publicly available computer program for intensity-based medical image registration. The software...
  • MURPAR

  • Referenced in 2 articles [sw29666]
  • biological data. We believe that our method is especially important for rapidly obtaining estimates ... further refined by more detailed and compute-intensive methods...
  • StateTrace

  • Referenced in 3 articles [sw16861]
  • confounded by range effects that plague alternative methods, especially when performance is measured ... efficient management of computationally intensive Bayesian methods for quantifying evidence about the outcomes...
  • Resampling Stats

  • Referenced in 12 articles [sw06019]
  • other computer-intensive procedures have revolutionized statistics. Resampling is now the method of choice...
  • LIPSOL

  • Referenced in 84 articles [sw04712]
  • solving linear programs by interior-Point methods. It requires Matlab version 4.0 or later ... hand, utilizing efficient Fortran codes for computationally intensive tasks, LIPSOL also has adequate speed...
  • SuperFine

  • Referenced in 3 articles [sw29605]
  • accurate of these phylogenetic estimation methods are extremely computationally intensive for data sets with more...
  • iLM-2L

  • Referenced in 2 articles [sw16853]
  • time-consuming and labor-intensive, several computational methods have been developed for the identification...
  • PREvaIL

  • Referenced in 10 articles [sw25073]
  • experimental methods used for identifying catalytic residues are resource- and labor-intensive, computational approaches have ... this study, we describe a new computational method called PREvaIL for predicting enzyme catalytic residues...
  • GAMESS

  • Referenced in 40 articles [sw03002]
  • vibrational frequencies, with IR or Raman intensities. Solvent effects may be modeled by the discrete ... Polarizable Continuum Model. Numerous relativistic computations are available, including infinite order two component scalar corrections ... orbit coupling options. The Fragment Molecular Orbital method permits use of many of these sophisticated...
  • PsN

  • Referenced in 2 articles [sw16113]
  • setting and resampling, to advanced computer-intensive statistical methods. PsN includes stand-alone tools...
  • PsN-Toolkit

  • Referenced in 2 articles [sw16112]
  • Toolkit — A collection of computer intensive statistical methods for non-linear mixed effect modeling using ... programming library Perl-speaks-NONMEM (PsN). Five methods: the Bootstrap, the Jackknife, Log-likelihood Profiling ... supported on shared memory multiprocessor (SMP) computers, Mosix/openMosix clusters and distributed computing environments following...
  • ASIAN

  • Referenced in 3 articles [sw36771]
  • gene regulatory network, and some computational methods have been intensively developed to deduce the gene ... wide variety of data within a reasonable computational time. The server allows users to input...
  • Feel++

  • Referenced in 39 articles [sw05898]
  • nevertheless - encompass a wide range of numerical methods and techniques, - build mathematical software that follows ... rationale being that these applications are computing intensive and the use of an interpreted language...