• BGRMI

  • Referenced in 2 articles [sw29320]
  • high accuracy but are computation intensive whereas model-based methods are fast but less accurate ... Regulation Model Inference (BGRMI), a model-based method for inferring GRNs from time-course gene ... higher/comparable accuracy at a fraction of the computational cost of competing algorithms. Additionally...
  • evtree

  • Referenced in 12 articles [sw14304]
  • trees is to use global optimization methods like evolutionary algorithms. The evtree package implements ... memory-intensive tasks are fully computed in C++ while the partykit package is leveraged...
  • Reptile

  • Referenced in 2 articles [sw35195]
  • with existing error correction methods is both compute and memory intensive, yet the results ... experiments show that Reptile outperforms previous methods in the percentage of errors removed from...
  • PSPASES

  • Referenced in 14 articles [sw00739]
  • systems of linear equations, as a computationally intensive step towards the final solution ... million equations) ever solved by a direct method, with the highest performance (51 GFLOPS...
  • HotSpotter

  • Referenced in 2 articles [sw07934]
  • clutches to thermoelastic instability (TEI). An eigenvalue method is used to determine the exponential growth ... therefore extremely computer-intensive. The HotSpotter algorithm uses the eigenvalue method which removes time from ... cross sectional plane. These techniques greatly reduce computational time and increase numerical accuracy...
  • STKFMM

  • Referenced in 2 articles [sw40024]
  • different simulation methods for Stokes flow problems involve a common computationally intense task -- the summation ... technique is the kernel independent fast multipole method (KIFMM), which constructs a spatial adaptive octree...
  • GAIN-MPI

  • Referenced in 1 article [sw22284]
  • accelerated intensities MPI (GAIN-MPI): a new method of computing Einstein-A coefficients. Calculating dipole...
  • BRISK

  • Referenced in 18 articles [sw29764]
  • this paper we propose BRISK, a novel method for keypoint detection, description and matching ... algorithms, albeit at a dramatically lower computational cost (an order of magnitude faster than SURF ... assembly of a bit-string descriptor from intensity comparisons retrieved by dedicated sampling of each...
  • Algorithm 971

  • Referenced in 10 articles [sw22686]
  • have witnessed intense development of randomized methods for low-rank approximation. These methods target principal ... MATLAB, a popular software platform for numerical computation. As illustrated via several tests, the randomized...
  • SPAR

  • Referenced in 3 articles [sw02379]
  • method is a general and powerful technique for solving partial differential equations. The computationally intensive ... exploited for efficient use of memory and computational components in executing the solution step ... performing computations on sparse matrices. SPAR consists of an alternate method of representing sparse matrices...
  • DTHB3D_Reg

  • Referenced in 5 articles [sw40372]
  • minimizes sum of squared difference in the intensity values of the grayscale images. Control points ... matrices as in finite element method. To improve the computational efficiency, an adaptive strategy carries...
  • UPFPSR

  • Referenced in 1 article [sw41918]
  • labor-intensive. Therefore, it is highly desired to develop automated computational methods that can recognize...
  • Weave

  • Referenced in 1 article [sw36378]
  • Semicoherent search methods are commonly used to efficiently perform the computationally-intensive task of searching ... implementation of a semicoherent search method, Weave, that for the first time makes full ... required number of templates and hence the computational cost of the search. We describe...
  • Trace

  • Referenced in 1 article [sw39950]
  • large-scale datasets. Methods: We present Trace, a data-intensive computing engine that we have...
  • HSEARCH

  • Referenced in 0 articles [sw18391]
  • clustering protein sequence motifs are computational intensive. Most existing methods are not fast enough...
  • Styx

  • Referenced in 3 articles [sw18343]
  • information is needed, the most efficient method is obviously Monte Carlo. However, when perfect knowledge ... time intensive approach may soon overwhelm even the most powerful computer. To deal with these ... geometry. The computer code Styx, built on this efficient set of numerical methods, specially designed...
  • h2pacflo

  • Referenced in 2 articles [sw10813]
  • range of laser frequencies, intensities and internuclear separations. The theoretical method is discussed and instructions ... accompanying computer program, which also produces ionization rates for DC field ionization, are given...
  • iDNA-MS

  • Referenced in 1 article [sw40056]
  • iDNA-MS: An Integrated Computational Tool for Detecting DNA Modification Sites in Multiple Genomes. 5hmC ... labor-intensive and expensive nature of experimental methods, it is urgent to develop computational methods...
  • TRHD

  • Referenced in 18 articles [sw16786]
  • have been developed for the simulation of intense thermal radiation or high-power laser driven ... solved using a compatible unstructured Lagrangian method based on a control volume differencing (CVD) scheme ... matter energies are required to be computed self-consistently. For this, the coupled flux limited...
  • PyGBe

  • Referenced in 5 articles [sw17642]
  • boundary element method for molecular-electrostatics calculations in a continuum model. It computes solvation energies ... NVIDIA GPU hardware on the most computationally intensive parts of the code using CUDA kernels...