• WENOCLAW

  • Referenced in 10 articles [sw07611]
  • phenomena are governed by hyperbolic systems of conservation laws 𝐪 t +f(𝐪 ... applicable to general hyperbolic systems of the form 𝐪 t +A(𝐪,x,t)𝐪...
  • PipMaker

  • Referenced in 8 articles [sw17257]
  • comparing two long DNA sequences to identify conserved segments and for producing informative, high-resolution ... sequences in a compact and easily understandable form. Positions along the horizontal axis ... regulatory elements) depend on the level of conservation and the time and divergence rate since...
  • DIMA

  • Referenced in 4 articles [sw26868]
  • resource--exploring the protein domain network. Conserved domains represent essential building blocks of most known ... modular components carrying out specific functions they form a network based both on functional relations...
  • DG_DATH_ELASTIC_V1.0

  • Referenced in 7 articles [sw35139]
  • elastic wave equation in second order form. We present an application of our general formulation ... depending on the choice of numerical flux, conserve or dissipate the elastic energy. The performance...
  • SOVA

  • Referenced in 3 articles [sw03274]
  • effect. Eulerian, three-dimensional, numerical code, which conserves mass, momentum and energy si-multaneously both ... steps, is developed. The use of special form of linearviscosity provides a weaker time step...
  • EPISO

  • Referenced in 4 articles [sw02494]
  • motored reciprocating engines. Firstly the three-dimensional conservation equations governing the flow processes in asymmetric ... equations are then cast into finite volume forms, using orthogonal curvilinear computational grids. The operator...
  • 2D2V

  • Referenced in 3 articles [sw21785]
  • particle equations is written in a form with the electric field factored out and inserted ... system is very robust with excellent energy conserving properties. This technique is applicable...
  • YASS

  • Referenced in 5 articles [sw22992]
  • constrained seeds to specify the most probable conserved motifs between homologous sequences, combined with ... visualize the results obtained in several forms (dot-plot, tabular output and others). A standalone...
  • SPICE

  • Referenced in 2 articles [sw14773]
  • input two ingredients: a standard flavor-conserving supersymmetric spectrum and a set of flavor-violating ... SPICE then combines these two ingredients to form a flavor-violating model, determines the resulting ... used to generate collider events. The flavor-conserving model may be any of the standard...
  • WHAM

  • Referenced in 11 articles [sw18138]
  • this regime. We use a modified form of the weighted essentially non-oscillatory (WENO) method ... integral of the fluxes, converts cell-averaged conserved quantities to point-conserved quantities before performing...
  • EVEREST

  • Referenced in 3 articles [sw22975]
  • EVEREST: a collection of evolutionary conserved protein domains. Protein domains are subunits of proteins that ... EVEREST families. Finally an advanced search form allows querying for families matching criteria regarding novelty...
  • MUI

  • Referenced in 12 articles [sw18209]
  • simulations. The library adopts a header-only form with minimal external dependency and hence ... domain by coupling the particle-based energy-conserving DPD (eDPD) method with the Finite Element...
  • PolyAML

  • Referenced in 5 articles [sw08950]
  • equipped with a type inference algorithm that conservatively extends Hindley-Milner type inference. To support ... Milner type inference algorithm with a simple form of local type inference.We give our language...
  • mb4-nls2d

  • Referenced in 1 article [sw38939]
  • conservation of the total energy is often essential, especially when energy conversion between different forms...
  • Floquet

  • Referenced in 3 articles [sw36064]
  • driving, so that their solutions have Floquet form and represent eigenfunctions of a non-unitary ... long-time limit as well as the conservative and the high-temperature limits. Numerical results...
  • OpenCMP

  • Referenced in 1 article [sw42101]
  • discontinuous Galerkin method which is locally conservative and improves simulation stability for convection-dominated problems ... OpenCMP implements the diffuse interface method, a form of immersed boundary method which allows...
  • FLAG

  • Referenced in 10 articles [sw09041]
  • such that a “cloud” of particulate matter forms and propagates away from the material. Modeling ... motion. The numerics were shown to conserve mass, momentum and energy, and preliminary results were...
  • TRAVIS

  • Referenced in 1 article [sw16782]
  • ECCD, an adjoint technique with parallel momentum conservation is applied. The code is controlled through ... results in convenient (2D and 3D) form...
  • ConFunc

  • Referenced in 2 articles [sw35349]
  • alignments according to their GO annotations. Conserved residues are identified for each GO term ... results demonstrate the potential for ConFunc to form part of an automated genomics annotation pipeline...
  • mirWIP

  • Referenced in 1 article [sw27474]
  • region of the microRNA. These enriched characteristics form the basis for a quantitative microRNA target ... method can capture all of the known conserved microRNA:mRNA target relationships in C. elegans...