• Concorde

  • Referenced in 317 articles [sw04770]
  • traveling salesman problem (TSP) and some related network optimization problems. The code is written ... academic research use; for other uses, contact William Cook for licensing options. Concorde ... solver includes code for running over networks of UNIX workstations...
  • SNDlib

  • Referenced in 72 articles [sw00884]
  • resources related to fixed network design, and to provide a contact platform for researchers ... library includes a set of network design instances together with the best known solutions...
  • epinet

  • Referenced in 14 articles [sw24733]
  • tools. Simulates transmission of diseases through contact networks. Performs Bayesian inference on network and epidemic...
  • PREvaIL

  • Referenced in 10 articles [sw25073]
  • inferring catalytic residues using sequence, structural, and network features in a machine-learning framework. Determining ... levels, including sequence, structure, and residue-contact network, in a random forest machine-learning framework...
  • FluTE

  • Referenced in 10 articles [sw31627]
  • this model have realistic social contact networks, and transmission and infections are based...
  • EpiSimdemics

  • Referenced in 7 articles [sw36952]
  • infectious disease over large realistic social networks. Preventing and controlling outbreaks of infectious diseases such ... contagion in large, realistic social contact networks using individual-based models. EpiSimdemics is an interaction...
  • NNcon

  • Referenced in 6 articles [sw17013]
  • prediction using 2D-recursive neural networks. Protein contact map prediction is useful for protein folding...
  • Code_Aster

  • Referenced in 56 articles [sw06676]
  • research in various fields : fatigue, damage, fracture, contact, geomaterials, porous media, multi-physics coupling ... maintenance of power plants and electrical networks...
  • dynsbm

  • Referenced in 3 articles [sw18392]
  • level view.We analyse a dynamic animal contact network and a seasonal food...
  • EpiILM

  • Referenced in 3 articles [sw31968]
  • package EpiILM: Spatial and Network Based Individual Level Models for Epidemics. Provides tools for simulating ... epidemic model class contains spatial and contact-network based models with two disease types: Susceptible...
  • EpiFire

  • Referenced in 1 article [sw31626]
  • source C++ library and application for contact network epidemiology. Background: Contact network models have become ... generation and analysis of epidemiological contact networks and for the simulation of disease transmission through ... network models with a focus in contact network epidemiology. EpiFire also provides a point...
  • CFinder

  • Referenced in 25 articles [sw12379]
  • show that in gene (protein) association networks CFinder can be used to predict the function ... Supplementary data are available on Bioinformatics online. Contact:cfinder@angel.elte.hu...
  • EpiILMCT

  • Referenced in 3 articles [sw31969]
  • package EpiILMCT: Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics. Provides ... models considered are distance-based and/or contact network-based models within Susceptible-Infectious-Removed...
  • PATH 4.0

  • Referenced in 1 article [sw40006]
  • network modeling (ABENM) technique and evolving contact network algorithm (ECNA) for generating scale-free networks...
  • MrTADFinder

  • Referenced in 2 articles [sw34259]
  • MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions. Genome ... From a visual examination of the chromosomal contact map, however, it is clear that ... chromosomal contact map and densely connected modules in a network, we formulate TAD identification ... from intra-chromosomal contact maps. MrTADFinder is based on the network-science concept of modularity...
  • OutbreakTools

  • Referenced in 1 article [sw24061]
  • graphics for visualising timelines, maps, contact networks and genetic analyses. It also includes a simple...
  • SimInf

  • Referenced in 1 article [sw14925]
  • modeling that incorporates the time-varying contact network and the population demographic. This paper introduces...
  • NRGTEN

  • Referenced in 1 article [sw36446]
  • inclusion of the ENCoM model (Elastic Network Contact Model) developed in our group within NRGTEN...
  • DL_ANALYSER

  • Referenced in 1 article [sw37768]
  • variety of hydrogen bond and hydrophobic contact networks through the use of the DANAI expression...