• PSwarm

  • Referenced in 66 articles [sw00742]
  • search method, or more specifically, a coordinate search method, which guarantees convergence to stationary points ... optional) search step of coordinate search, the algorithm incorporates a particle swarm scheme for dissemination...
  • MCS

  • Referenced in 69 articles [sw14657]
  • Global Optimization by Multilevel Coordinate Search. MCS is a Matlab program for bound constrained global ... values only, based on a multilevel coordinate search that balances global and local search...
  • veriSoft

  • Referenced in 91 articles [sw01489]
  • VeriSoft automatically searches for coordination problems (deadlocks, etc.) and assertion violations in a software system...
  • IMFIL

  • Referenced in 40 articles [sw04814]
  • higher derivatives, implicit filtering builds upon coordinate search and then interpolates to get an approximation...
  • simannf90

  • Referenced in 118 articles [sw05059]
  • iterative random search procedure with adaptive moves along the coordinate directions. It permits uphill moves ... Nelder-Mead method and the adaptive random search method of the reviewer), being always able...
  • MSO

  • Referenced in 5 articles [sw35041]
  • objective function domain over multiple scales in search for the global optimum. For such algorithms ... namely, Lipschitzian optimization methods, multi-level coordinate search, dividing rectangles, and optimistic optimization methods have...
  • MISO

  • Referenced in 6 articles [sw20541]
  • that combine different sampling strategies and local search to obtain high-accuracy solutions. We compare ... MISO algorithm that combines a coordinate perturbation search with a target value strategy...
  • L0Learn

  • Referenced in 11 articles [sw36841]
  • algorithms are based on coordinate descent and local combinatorial search. For more details, check...
  • GLS

  • Referenced in 1 article [sw12691]
  • Matlab line search routines. GLS is a Matlab program for univariate local or global optimization ... used for global coordinate searches by choosing as search direction p a vector with...
  • R-chaosoptimiser

  • Referenced in 1 article [sw07892]
  • wave algorithm, the chaos-based cyclical coordinate search method and the second wave carrier algorithm...
  • D*Lite

  • Referenced in 6 articles [sw20991]
  • from given start coordinates to given goal coordinates in unknown terrain. In this case, they ... heuristic search method that repeatedly determines a shortest path from the current robot coordinates ... goal coordinates while the robot moves along the path. It is able to replan ... planning from scratch since it modifies previous search results locally. Consequently, it has been extensively...
  • ConfBuster

  • Referenced in 1 article [sw27289]
  • analysis and visualisation of the conformational search results. Coordinate sets of single molecules in MOL2 ... lower energy conformation coordinates is returned as output, as well as PyMOL script and graphics ... only open-source tools for macrocycle conformational search available to the scientific community...
  • IDB-ADOPT

  • Referenced in 2 articles [sw02746]
  • ADOPT: A depth-first search DCOP algorithm. Many agent coordination problems can be modeled ... problems. ADOPT is an asynchronous and distributed search algorithm that is able to solve DCOP...
  • PyBerny

  • Referenced in 1 article [sw33442]
  • internal coordinates, an iterative Hessian approximation, a trust region scheme, and linear search. The algorithm ... welcome): crystal geometries, coordinate constraints, coordinate weighting, transition state search. PyBerny is available in PySCF...
  • MinRMS

  • Referenced in 2 articles [sw26877]
  • within a heuristically limited search space. The alignment algorithm uses coordinates of alpha-carbon atoms ... protein sequences. For practical purposes, the search is exhaustive. The method is fast enough...
  • AHFinderDirect

  • Referenced in 25 articles [sw04972]
  • assume that an AH to be searched for is a Strahlkörper (`star-shaped region’) with ... Cartesian-coordinate spatial derivatives of g ij . I discretize S 2 using six angular patches...
  • TRIPACK

  • Referenced in 15 articles [sw00978]
  • constraint regions) while retaining the efficiency of searching and updating a convex triangulation. The package ... locations in addition to the $2N$ nodal coordinates...
  • RapidPolygonLookup

  • Referenced in 1 article [sw24246]
  • trees. Facilitates efficient polygon search using kd trees. Coordinate level spatial data can be aggregated ... exploit kd-trees as efficient nearest neighbor search algorithm to dramatically reduce the effective number...
  • DICE

  • Referenced in 2 articles [sw02641]
  • coordination-based framework for distributed constraint solving. This paper gives an overview of DICE (DIstributed ... incomplete) solvers, (3) splitting strategies, to build search trees, and (4) search strategies ... traverse these search trees. DICE is implemented using the Manifold coordination language, and coordinates...
  • ArchPRED

  • Referenced in 2 articles [sw17375]
  • www.fiserlab.org/servers/archpred) implements a novel fragment-search based method for predicting loop conformations. The inputs ... server are the atomic coordinates of the query protein and the position of the loop ... fragments from a regularly updated loop library (Search Space) by matching the length, the types...