
URDME
 Referenced in 25 articles
[sw10400]
 general stochastic reactiontransport modeling and simulation. URDME uses Unstructured triangular and tetrahedral meshes ... interactive environment for model construction. The core simulation routines are logically separated from the model...

Celldesigner
 Referenced in 21 articles
[sw09942]
 integration with SBML ODE Solver, SBML Simulation Core and Copasi. By using CellDesigner ... SBML models with references to existing databases, simulate and view the dynamics through an intuitive...

SPOT
 Referenced in 86 articles
[sw06347]
 Development Core Team, 2008) is a toolbox for tuning and understanding simulation and optimization algorithms...

incompact3d
 Referenced in 26 articles
[sw06223]
 with up to O(10 5 ) computational cores. Understanding the nature of complex turbulent flows ... with massive parallel platforms in order to simulate turbulence problems with as much complexity ... computational cores by means of direct numerical simulation (DNS). DNS is the simplest approach conceptually ... with up to 1024 computational cores...

Alloy
 Referenced in 30 articles
[sw01247]
 amenable to fully automatic simulation and checking. At its core, Alloy is a simple first...

IGAADS
 Referenced in 5 articles
[sw28341]
 GALOIS framework. It enables parallel multicore simulations of different timedependent problems ... PDEs, and execution of the simulations on multicore Linux cluster nodes. We consider three ... Gnuplot and ParaView visualization software. The exemplary simulations show near perfect scalability on Gilbert shared ... processors, each possessing 10 physical cores (for a total of 40 cores...

MAGIC
 Referenced in 38 articles
[sw14159]
 iterative framework for simulation conformance. MAGIC is a software verification project for C source code ... core principles implemented in the MAGIC verification engine, i.e., specification conformance using simulation and abstraction...

GPSCL
 Referenced in 20 articles
[sw18629]
 programs, which allow numerical simulations to use all available CPU cores on a computer...

PhysiCell
 Referenced in 7 articles
[sw30634]
 cells are feasible on quadcore desktop workstations; larger simulations are attainable on single ... demonstrate PhysiCell by simulating the impact of necrotic core biomechanics, 3D geometry, and stochasticity ... immunology. PhysiCell is a powerful multicellular systems simulator that will be continually improved with...

waLBerla
 Referenced in 21 articles
[sw01472]
 improved such that simulation runs on up to 9 152 processor cores are possible with...

PyURDME
 Referenced in 2 articles
[sw16723]
 general software framework for modeling and simulation of stochastic reactiondiffusion processes on unstructured, tetrahedral ... structured, Cartesian meshes. The current core simulation algorithm is based on the mesoscopic reactiondiffusion ... assembly, see http://fenicsproject.org/. The core simulation routines are implemented in C, and requires...

ALPSCore
 Referenced in 3 articles
[sw28323]
 ALPSCore: Applications and Libraries for Physics Simulations Core libraries. The ALPS Core libraries ... tested, robust, and standardized components for numerical simulations of condensed matter systems, in particular systems...

iNA
 Referenced in 4 articles
[sw17973]
 tools are complemented by automated multicore stochastic simulations with direct statistical evaluation and visualization...

FLICAOVAP
 Referenced in 13 articles
[sw18356]
 dedicated to core thermal–hydraulic studies, funded by the Thermal–hydraulics Simulation project ... provide a relevant response to different core concepts and multiple industrial applications, several models coexist...

simuPOP
 Referenced in 6 articles
[sw11732]
 forwardtime population genetics simulation environment. The core of simuPOP is a scripting language (Python ... flexible and extensible design, simuPOP can simulate large and complex evolutionary processes with ease...

sPuReMD
 Referenced in 6 articles
[sw12865]
 charge equilibration solver at the core of the simulation engine. This Krylov subspace solver relies...

qTorch
 Referenced in 5 articles
[sw27767]
 network contraction program for simulating quantum circuits using multicore compute nodes. We show simulation...

TPLS
 Referenced in 2 articles
[sw17598]
 code is therefore simplified and modified to simulate pressuredriven singlephase flow ... scalability up to 1000 CPU cores. Simulations are performed for several benchmark cases in pressure...

Insilico
 Referenced in 2 articles
[sw18203]
 this paper we describe the reactor physics simulation capabilities of the Insilico code. A description ... capable of delivering highly accurate fullcore simulation of various pressurized water reactor problems. Comparison...

DAMASK
 Referenced in 6 articles
[sw32144]
 DAMASK  the Düsseldorf Advanced Material Simulation Kit. At the core of DAMASK is a flexible ... thermal physics. Its main purpose is the simulation of crystal plasticity within a finitestrain...