• URDME

  • Referenced in 25 articles [sw10400]
  • general stochastic reaction-transport modeling and simulation. URDME uses Unstructured triangular and tetrahedral meshes ... interactive environment for model construction. The core simulation routines are logically separated from the model...
  • Celldesigner

  • Referenced in 21 articles [sw09942]
  • integration with SBML ODE Solver, SBML Simulation Core and Copasi. By using CellDesigner ... SBML models with references to existing databases, simulate and view the dynamics through an intuitive...
  • SPOT

  • Referenced in 86 articles [sw06347]
  • Development Core Team, 2008) is a toolbox for tuning and understanding simulation and optimization algorithms...
  • incompact3d

  • Referenced in 26 articles [sw06223]
  • with up to O(10 5 ) computational cores. Understanding the nature of complex turbulent flows ... with massive parallel platforms in order to simulate turbulence problems with as much complexity ... computational cores by means of direct numerical simulation (DNS). DNS is the simplest approach conceptually ... with up to 1024 computational cores...
  • Alloy

  • Referenced in 30 articles [sw01247]
  • amenable to fully automatic simulation and checking. At its core, Alloy is a simple first...
  • IGA-ADS

  • Referenced in 5 articles [sw28341]
  • GALOIS framework. It enables parallel multi-core simulations of different time-dependent problems ... PDEs, and execution of the simulations on multi-core Linux cluster nodes. We consider three ... Gnuplot and ParaView visualization software. The exemplary simulations show near perfect scalability on Gilbert shared ... processors, each possessing 10 physical cores (for a total of 40 cores...
  • MAGIC

  • Referenced in 38 articles [sw14159]
  • iterative framework for simulation conformance. MAGIC is a software verification project for C source code ... core principles implemented in the MAGIC verification engine, i.e., specification conformance using simulation and abstraction...
  • GP-SCL

  • Referenced in 20 articles [sw18629]
  • programs, which allow numerical simulations to use all available CPU cores on a computer...
  • PhysiCell

  • Referenced in 7 articles [sw30634]
  • cells are feasible on quad-core desktop workstations; larger simulations are attainable on single ... demonstrate PhysiCell by simulating the impact of necrotic core biomechanics, 3-D geometry, and stochasticity ... immunology. PhysiCell is a powerful multicellular systems simulator that will be continually improved with...
  • waLBerla

  • Referenced in 21 articles [sw01472]
  • improved such that simulation runs on up to 9 152 processor cores are possible with...
  • PyURDME

  • Referenced in 2 articles [sw16723]
  • general software framework for modeling and simulation of stochastic reaction-diffusion processes on unstructured, tetrahedral ... structured, Cartesian meshes. The current core simulation algorithm is based on the mesoscopic reaction-diffusion ... assembly, see http://fenicsproject.org/. The core simulation routines are implemented in C, and requires...
  • ALPSCore

  • Referenced in 3 articles [sw28323]
  • ALPSCore: Applications and Libraries for Physics Simulations Core libraries. The ALPS Core libraries ... tested, robust, and standardized components for numerical simulations of condensed matter systems, in particular systems...
  • iNA

  • Referenced in 4 articles [sw17973]
  • tools are complemented by automated multi-core stochastic simulations with direct statistical evaluation and visualization...
  • FLICA-OVAP

  • Referenced in 13 articles [sw18356]
  • dedicated to core thermal–hydraulic studies, funded by the Thermal–hydraulics Simulation project ... provide a relevant response to different core concepts and multiple industrial applications, several models coexist...
  • simuPOP

  • Referenced in 6 articles [sw11732]
  • forward-time population genetics simulation environment. The core of simuPOP is a scripting language (Python ... flexible and extensible design, simuPOP can simulate large and complex evolutionary processes with ease...
  • sPuReMD

  • Referenced in 6 articles [sw12865]
  • charge equilibration solver at the core of the simulation engine. This Krylov subspace solver relies...
  • qTorch

  • Referenced in 5 articles [sw27767]
  • network contraction program for simulating quantum circuits using multi-core compute nodes. We show simulation...
  • TPLS

  • Referenced in 2 articles [sw17598]
  • code is therefore simplified and modified to simulate pressure-driven single-phase flow ... scalability up to 1000 CPU cores. Simulations are performed for several benchmark cases in pressure...
  • Insilico

  • Referenced in 2 articles [sw18203]
  • this paper we describe the reactor physics simulation capabilities of the Insilico code. A description ... capable of delivering highly accurate full-core simulation of various pressurized water reactor problems. Comparison...
  • DAMASK

  • Referenced in 6 articles [sw32144]
  • DAMASK - the Düsseldorf Advanced Material Simulation Kit. At the core of DAMASK is a flexible ... thermal physics. Its main purpose is the simulation of crystal plasticity within a finite-strain...