• GeneRank

  • Referenced in 17 articles [sw27064]
  • gene annotations (gene ontologies) or expression profile correlations. Using both simulated and real data...
  • FADA

  • Referenced in 4 articles [sw16021]
  • supervised classification of high-dimensional and correlated profiles. The procedure combines a decorrelation step based...
  • dChipSNP

  • Referenced in 6 articles [sw18745]
  • regions, clustering samples based on LOH profiles and correlating the clustering results to clinical variables...
  • Cytoscape

  • Referenced in 80 articles [sw09080]
  • visually integrate the network with expression profiles, phenotypes, and other molecular states; and to link ... surveyed, including a search for interaction pathways correlating with changes in gene expression, a study...
  • ErmineJ

  • Referenced in 4 articles [sw30047]
  • focus on gene scores or correlation of gene expression profiles. In addition to a graphical...
  • ellipse

  • Referenced in 7 articles [sw04362]
  • correlation matrices, The American Statistician 50, 178-180. There are also routines implementing the profile...
  • corrgrapher

  • Referenced in 1 article [sw35215]
  • package corrgrapher: Explore Correlations Between Variables in a Machine Learning Model. When exploring data ... exploration of the Partial Dependence Profiles and the correlation between variables in the model...
  • Cascleave

  • Referenced in 3 articles [sw25087]
  • profiles, Cascleave successfully predicted 82.2% of the known substrate cleavage sites, with a Matthews correlation ... most likely natively unstructured. Novel bi-profile Bayesian signatures were found to significantly improve...
  • ptw

  • Referenced in 1 article [sw19183]
  • Weighted Cross Correlation). Both warping of peak profiles and of peak lists are supported...
  • MultiLoc2

  • Referenced in 8 articles [sw22456]
  • since localization and biological function are highly correlated. In recent years, numerous computational prediction methods ... previous MultiLoc predictor by incorporating phylogenetic profiles and Gene Ontology terms. Two different datasets were...
  • ASIAN

  • Referenced in 3 articles [sw36771]
  • from a large number of gene expression profiles, based on graphical Gaussian modeling ... calculation of the inverse of the correlation coefficient matrix between variables, and therefore, our server ... server allows users to input the expression profiles, and it outputs the dendrogram of genes...
  • clippda

  • Referenced in 1 article [sw10352]
  • nalysis of data from clinical proteomic profiling studies. The focus is on the studies ... data and the within-sample replicate correlations...
  • NetMine

  • Referenced in 2 articles [sw02020]
  • NetMine performs generalized association rule extraction to profile communications, detect anomalies, and identify recurrent patterns ... widely used exploratory technique to discover hidden correlations among data. However, it is usually driven...
  • AutoNet

  • Referenced in 1 article [sw30811]
  • extensive correlation analysis of human exon expression microarray data, conventional gene expression microarray profiles...
  • ExAtlas

  • Referenced in 1 article [sw29567]
  • combinations (e.g. all gene expression profiles versus all Gene Ontology annotations). ExAtlas handles both users ... Fisher’s methods); (2) analyses of global correlations between gene expression data sets; (3) gene ... overlap; (5) gene association by expression profile; (6) gene specificity; and (7) statistical analysis (ANOVA...
  • NARROMI

  • Referenced in 6 articles [sw24066]
  • reconstruction of GRNs from gene expression profiles, they are notorious for high false positive rate ... algorithm, the noisy regulations with low pairwise correlations are first removed by using...
  • PSNO

  • Referenced in 6 articles [sw27678]
  • sequence-derived discriminative features, including the evolutionary profile, the predicted secondary structure and the physicochemical ... good prediction performance with a mean Mathews correlation coefficient (MCC) value of about...
  • Methylation

  • Referenced in 1 article [sw29653]
  • solely on the sample’s gene expression profile and the sequence surrounding the CpG. Depending ... proximity, our model attains a Spearman correlation of up to 0.84 for thousands...
  • trc

  • Referenced in 1 article [sw30510]
  • study suggests that TRC outperforms traditional sample correlation and Kendall’s τ. We apply ... metabolome in HEK293 cells and metabolomic profiling of benign prostate hyperplasia (BPH) patients...
  • TecDEM

  • Referenced in 0 articles [sw15836]
  • profiles in the Kaghan Valley (Northern Pakistan). Our interpretations of the TecDEM results correlate well...