• ROCR

  • Referenced in 43 articles [sw04551]
  • ROCR is a flexible tool for creating cutoff-parametrized 2D performance curves by freely combining ... parametrization can be visualized by printing cutoff values at the corresponding curve positions ... coloring the curve according to cutoff. All components of a performance plot can be quickly...
  • multtest

  • Referenced in 22 articles [sw08262]
  • values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially...
  • TM-align

  • Referenced in 14 articles [sw22248]
  • Data Bank (PDB) with a sequence identity cutoff <95%: 1996 distinct folds are found when...
  • TINKER

  • Referenced in 10 articles [sw04095]
  • pairwise neighbor lists and splined spherical energy cutoff methods, particle mesh Ewald (PME) summation...
  • rdmulti

  • Referenced in 3 articles [sw37337]
  • rdmulti: Analysis of RD Designs with Multiple Cutoffs or Scores. The regression discontinuity (RD) design ... tools to analyze RD designs with multiple cutoffs or scores: rdmc() estimates pooled and cutoff ... specific effects for multi-cutoff designs, rdmcplot() draws RD plots for multi-cutoff designs ... rdms() estimates effects in cumulative cutoffs or multi-score designs. See Cattaneo, Titiunik and Vazquez...
  • PENELOPE

  • Referenced in 6 articles [sw01142]
  • and/or energy loss larger than pre-selected cutoffs) are simulated in a detailed way, while...
  • rdrobust

  • Referenced in 6 articles [sw16277]
  • intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings...
  • IDBA-UD

  • Referenced in 6 articles [sw17029]
  • depth contigs are removed iteratively with cutoff threshold from low to high to reduce...
  • GOtcha

  • Referenced in 4 articles [sw17189]
  • more simplistic approaches. At a P-score cutoff of 50%, GOtcha provided 60% better recovery ... annotation with TOPBLAST at an E-value cutoff of 10-4. Conclusions: The GOtcha method...
  • BioMark

  • Referenced in 5 articles [sw14240]
  • several t-tests. Two approaches for selecting cutoffs can be used, one based...
  • rddensity

  • Referenced in 3 articles [sw37332]
  • detect perfect self-selection (manipulation) around a cutoff where treatment/policy assignment changes. This package implements ... statistics and p-values given a prespecified cutoff, rdbwdensity() to perform data-driven bandwidth selection...
  • OptimalCutpoints

  • Referenced in 4 articles [sw15272]
  • continuous markers. Various approaches for selecting optimal cutoffs have been implemented, including methods based...
  • PyRIS

  • Referenced in 2 articles [sw37789]
  • river, ii) migration analysis following a large cutoff on the Ucayali River and iii) detection ... main channel in anabranching structures and chute cutoffs. PyRIS can extract extensive morphodynamic information with...
  • plotROC

  • Referenced in 3 articles [sw27899]
  • Most ROC curve plots obscure the cutoff values and inhibit interpretation and comparison of multiple...
  • rdbwselect

  • Referenced in 3 articles [sw37435]
  • average treatment effects at the cutoff in sharp RD, sharp kink RD, fuzzy...
  • multitest

  • Referenced in 2 articles [sw08130]
  • values, confidence regions and test statistic cutoffs. The procedures are directly applicable to identifying differentially...
  • MotifClick

  • Referenced in 2 articles [sw29728]
  • mers is greater than a cutoff value. We identify a motif...
  • RivMAP

  • Referenced in 2 articles [sw37598]
  • areas, areas of erosion and accretion, and cutoff identification, and creates reference grids for mapping...
  • NEEP

  • Referenced in 1 article [sw36005]
  • data. The algorithm empirically finds the optimal cutoff (within a range) to separate expression values ... high. The survival curves for this optimal cutoff are constructed. We calculate the MANTEL...
  • rdlocrand

  • Referenced in 1 article [sw37336]
  • randomized experiments inside a window around the cutoff. This package provides tools to perform randomization ... rdwinselect() to select a window around the cutoff in which randomization is likely to hold...