• SPLIDA

  • Referenced in 271 articles [sw27861]
  • distribution are data sets and instructions on how to replicate almost all of the analyses...
  • edgeR

  • Referenced in 53 articles [sw06936]
  • functional genomics applications. One of the fundamental data analysis tasks, especially for gene expression studies ... package for examining differential expression of replicated count data. An overdispersed Poisson model is used ... even with the most minimal levels of replication, provided at least one phenotype or experimental ... condition is replicated. The software may have other applications beyond sequencing data, such as proteome...
  • OptorSim

  • Referenced in 21 articles [sw09653]
  • Simulation of dynamic grid replication strategies in OptorSim. Computational Grids normally deal with large computationally ... intensive problems on small data sets. In contrast, Data Grids mostly deal with large computational ... evaluating and mining large amounts of data. Replication is regarded as one of the major ... providing fast data access. par Within this paper, several replication algorithms are studied. This...
  • EBarrays

  • Referenced in 31 articles [sw08355]
  • Bayes methodology for gene expression data to account for replicate arrays, multiple conditions...
  • MONARC

  • Referenced in 8 articles [sw08276]
  • dynamically loadable decision units (scheduling or data replication modules) for easily building complex Computing Model...
  • Chameleon

  • Referenced in 8 articles [sw17690]
  • both large number of processors and data replication mechanisms. The results achieved from Chameleon...
  • limma

  • Referenced in 61 articles [sw10458]
  • limma: Linear Models for Microarray Data. A survey is given of differential expression analyses using ... package. The chapter starts with the simplest replicated designs and progresses through experiments with ... Experiments with technical as well as biological replication are considered. Empirical Bayes test statistics ... linear modelling is illustrated on the β7 data...
  • LICRA

  • Referenced in 4 articles [sw02171]
  • LICRA: A replicated-data management algorithm for distributed synchronous groupware applications. Replicated data consistency...
  • Seq-Gen

  • Referenced in 33 articles [sw08310]
  • number of data sets for each tree. Thus large sets of replicate simulations...
  • Moldy

  • Referenced in 5 articles [sw01311]
  • such as MPI or BSP. The “replicated data” parallelization strategy is used to achieve reasonable...
  • MIRROR

  • Referenced in 4 articles [sw02280]
  • protocol for replicated real-time databases. Data replication can help database systems meet the stringent...
  • BSmooth

  • Referenced in 12 articles [sw23483]
  • results even with low coverage data, appropriately handling biological replicates. BSmooth is open source software...
  • PostgreSQL

  • Referenced in 80 articles [sw15935]
  • multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR ... MVCC), point in time recovery, tablespaces, asynchronous replication, nested transactions (savepoints), online/hot backups, a sophisticated ... scalable both in the sheer quantity of data it can manage and in the number...
  • rotasym

  • Referenced in 9 articles [sw36863]
  • decomposition, and allows for the replication of the data application considered in the paper...
  • Giggle

  • Referenced in 20 articles [sw20354]
  • files. Replication can be used to reduce access latency, improve data locality, and/or increase robustness...
  • gridfit

  • Referenced in 6 articles [sw22539]
  • fails when there are replicates or when the data has many collinear points. Griddata...
  • clusterSim

  • Referenced in 6 articles [sw16124]
  • generation (typical and non-typical data), HINoV method, replication analysis, linear ordering methods, spectral clustering ... functions (for categorial and symbolic interval-valued data...
  • DataDeps.jl

  • Referenced in 2 articles [sw28968]
  • DataDeps.jl: Repeatable Data Setup for Replicable Data Science. We present DataDeps.jl: a julia package ... data setup part of running software which accompanies a paper to replicate a result. This ... also useful for other packages which require data to function (e.g. a trained machine learning...
  • rp.flm.test

  • Referenced in 8 articles [sw28046]
  • tests and allows the replication of simulations and data applications...
  • CFL

  • Referenced in 2 articles [sw25446]
  • automatically introduces MPI communication to keep replicated data consistent. This paper concerns a simple...