Results 1 to 16 of 16
Sort by:

  • 3DRobot
  • Referenced in 0 articles [sw34254]
  • diverse and well-packed protein structure decoys. Given a native structure as input, 3DRobot first ... identifies diverse structure scaffolds from a non-redundant PDB library. Restraint-free fragment reassembly simulations ... construct diverse full-length models. The final decoys are further refined at atomic-level ... aims to provide high-quality protein structural decoy sets for designing and training protein folding...

  • TUNE
  • Referenced in 1 article [sw35757]
  • discrimination of native and decoy protein 3D structures. With a residue level structural description...

  • LIGSIFT
  • Referenced in 0 articles [sw34544]
  • describe a new open-source ligand structure alignment and virtual screening (VS) algorithm, LIGSIFT, that ... targets available in the Directory of Useful Decoys and the performance was evaluated using...

  • CHARMM
  • Referenced in 120 articles [sw05953]
  • CHARMM (Chemistry at HARvard Macromolecular Mechanics). CHARMM models...

  • I-TASSER
  • Referenced in 18 articles [sw17207]
  • I-TASSER: a unified platform for automated protein...

  • TM-align
  • Referenced in 15 articles [sw22248]
  • TM-align: a protein structure alignment algorithm based...

  • SCWRL4
  • Referenced in 7 articles [sw22393]
  • Improved prediction of protein side-chain conformations with...

  • iPPI-Esml
  • Referenced in 26 articles [sw22413]
  • iPPI-Esml: An ensemble classifier for identifying the...

  • iDNA-Methyl
  • Referenced in 19 articles [sw22423]
  • iDNA-Methyl: identifying DNA methylation sites via pseudo...

  • iRSpot-PseDNC
  • Referenced in 65 articles [sw22437]
  • iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide...

  • iCTX-Type
  • Referenced in 21 articles [sw22440]
  • iCTX-Type: A Sequence-Based Predictor for Identifying...

  • iNitro-Tyr
  • Referenced in 22 articles [sw22450]
  • iNitro-Tyr: prediction of nitrotyrosine sites in proteins...

  • GenThreader
  • Referenced in 10 articles [sw35746]
  • Fold Recognition (GenTHREADER). GenThreader: Detect distant homology to...

  • 3DIGARS
  • Referenced in 1 article [sw36904]
  • 3DIGARS-PSP: A Novel Statistical Energy Function and...