• 3DRobot

  • Referenced in 0 articles [sw34254]
  • diverse and well-packed protein structure decoys. Given a native structure as input, 3DRobot first ... identifies diverse structure scaffolds from a non-redundant PDB library. Restraint-free fragment reassembly simulations ... construct diverse full-length models. The final decoys are further refined at atomic-level ... aims to provide high-quality protein structural decoy sets for designing and training protein folding...
  • TUNE

  • Referenced in 1 article [sw35757]
  • discrimination of native and decoy protein 3D structures. With a residue level structural description...
  • LIGSIFT

  • Referenced in 0 articles [sw34544]
  • describe a new open-source ligand structure alignment and virtual screening (VS) algorithm, LIGSIFT, that ... targets available in the Directory of Useful Decoys and the performance was evaluated using...
  • CHARMM

  • Referenced in 120 articles [sw05953]
  • CHARMM (Chemistry at HARvard Macromolecular Mechanics). CHARMM models...
  • I-TASSER

  • Referenced in 18 articles [sw17207]
  • I-TASSER: a unified platform for automated protein...
  • TM-align

  • Referenced in 15 articles [sw22248]
  • TM-align: a protein structure alignment algorithm based...
  • SCWRL4

  • Referenced in 7 articles [sw22393]
  • Improved prediction of protein side-chain conformations with...
  • iPPI-Esml

  • Referenced in 26 articles [sw22413]
  • iPPI-Esml: An ensemble classifier for identifying the...
  • iDNA-Methyl

  • Referenced in 19 articles [sw22423]
  • iDNA-Methyl: identifying DNA methylation sites via pseudo...
  • iRSpot-PseDNC

  • Referenced in 65 articles [sw22437]
  • iRSpot-PseDNC: identify recombination spots with pseudo dinucleotide...
  • iCTX-Type

  • Referenced in 21 articles [sw22440]
  • iCTX-Type: A Sequence-Based Predictor for Identifying...
  • iNitro-Tyr

  • Referenced in 22 articles [sw22450]
  • iNitro-Tyr: prediction of nitrotyrosine sites in proteins...
  • GenThreader

  • Referenced in 10 articles [sw35746]
  • Fold Recognition (GenTHREADER). GenThreader: Detect distant homology to...
  • 3DIGARS

  • Referenced in 1 article [sw36904]
  • 3DIGARS-PSP: A Novel Statistical Energy Function and...