• dynamicTreeCut

  • Referenced in 17 articles [sw12570]
  • detection of clusters in hierarchical clustering dendrograms. Contains methods for detection of clusters in hierarchical ... clustering dendrograms...
  • seriation

  • Referenced in 17 articles [sw08209]
  • techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also contains some visualizations techniques based...
  • HykGene

  • Referenced in 9 articles [sw23981]
  • clustering on these genes to generate a dendrogram. Finally, the dendrogram was analyzed...
  • dendextend

  • Referenced in 8 articles [sw16586]
  • Offers a set of functions for extending dendrogram objects in R, letting you visualize ... labels. (2) Visually and statistically compare different dendrograms to one another...
  • bclust

  • Referenced in 6 articles [sw23381]
  • Using Spike and Slab Models. Builds a dendrogram using log posterior as a natural distance...
  • DIVCLUS-T

  • Referenced in 5 articles [sw02736]
  • monothetic bipartitional approach allowing the dendrogram of the hierarchy to be read as a decision...
  • DESPOTA

  • Referenced in 3 articles [sw26834]
  • partition in the extended hierarchy of a dendrogram. DESPOTA is a method proposed to seek ... partition among the ones hosted in a dendrogram. The algorithm visits nodes from the tree...
  • idendr0

  • Referenced in 2 articles [sw23388]
  • Interactive Dendrograms: The R Packages idendro and idendr0. Hierarchical cluster analysis is a valuable tool ... data by describing their structure using a dendrogram. However, proper visualization and interactive inspection ... dendrogram are needed to unlock the information in the data. We describe ... idendro, that enables the user to inspect dendrograms interactively: to select and color clusters...
  • DAVIS

  • Referenced in 4 articles [sw00189]
  • like: flipped empirical distribution function, parallel coordinates, Dendrogram, scatterplot matrix, Grand Touring and Tracking Grand...
  • networkD3

  • Referenced in 4 articles [sw19417]
  • from R. Creates ’D3’ ’JavaScript’ network, tree, dendrogram, and Sankey graphs from...
  • DeBaCl

  • Referenced in 3 articles [sw23572]
  • hierarchy of data modes as a dendrogram of the level sets of a density estimator...
  • eBURST

  • Referenced in 3 articles [sw35650]
  • similar genotypes. Traditional clustering techniques, such as dendrograms, provide a very poor representation of recent...
  • ASIAN

  • Referenced in 3 articles [sw36771]
  • expression profiles, and it outputs the dendrogram of genes by several hierarchical clustering techniques...
  • ggdendro

  • Referenced in 1 article [sw31448]
  • package ggdendro: Create Dendrograms and Tree Diagrams Using ’ggplot2’. This is a set of tools ... dendrograms and tree plots using ’ggplot2’. The ’ggplot2’ philosophy is to clearly separate data from ... presentation. Unfortunately the plot method for dendrograms plots directly to a plot device without exposing ... making available functions that extract the dendrogram plot data. The package provides implementations for tree...
  • phylogram

  • Referenced in 1 article [sw28942]
  • package phylogram: Dendrograms for Evolutionary Analysis. Contains functions for developing phylogenetic trees as deeply-nested ... lists (”dendrogram” objects). Enables bi-directional conversion between dendrogram and ”phylo” objects (see Paradis...
  • CluSim

  • Referenced in 1 article [sw29106]
  • package for the comparison of clusterings and dendrograms. Quantifying the similarity of clusterings ... partitions, overlapping clusterings, and hierarchical clusterings (dendrograms) with more than 20 similarity measures. The CluSim ... comparisons between a set of phylogentic trees (dendrograms...
  • clustergram

  • Referenced in 2 articles [sw06304]
  • following. This method is compared to the dendrograms for hierarchical clusterization. An analysis of data...
  • VARCLUS

  • Referenced in 2 articles [sw14475]
  • output table; automatically displays a dendrogram (tree diagram of hierarchical clusters) by using ODS Graphics...
  • PRALINE

  • Referenced in 2 articles [sw16248]
  • based, can also be visualized as a dendrogram. PRALINE is available at http://ibivu.cs.vu.nl/programs/pralinewww/....
  • AS 102

  • Referenced in 2 articles [sw27924]
  • Ultrametric Distances for a Single Linkage Dendrogram...