• FODE

  • Referenced in 323 articles [sw08377]
  • fluid in porous media, diffusion of plasma, diffusion at liquid surfaces, etc. The fractional approach ... scenarios such as continuous time random walk models, generalized Langevin equations, or the generalized master ... equation. To investigate the subdiffusion of anomalous diffusion, it would be useful to study...
  • PRED_PREY

  • Referenced in 86 articles [sw12310]
  • dynamics of predator-prey interactions modelled by nonlinear reaction-diffusion systems. The collection of codes ... predator-prey interactions modelled by a nonlinear reaction-diffusion system. Unlike FD2D the systems...
  • HDDM

  • Referenced in 11 articles [sw16420]
  • Hierarchical Bayesian estimation of the Drift-Diffusion Model in Python. The diffusion model ... based toolbox called HDDM (hierarchical drift diffusion model), which allows fast and flexible estimation ... drift-diffusion model and the related linear ballistic accumulator model. HDDM requires fewer data ... theoretical background of the drift diffusion model and Bayesian inference. We then illustrate usage...
  • Krill herd

  • Referenced in 53 articles [sw25670]
  • foraging activity, and (iii) random diffusion. For more precise modeling of the krill behavior...
  • Fast-dm

  • Referenced in 11 articles [sw09136]
  • free program for efficient diffusion model analysis. In the present article, a flexible and fast ... computer program, calledfast-dm, for diffusion model data analysis is introduced. Fast-dm is free ... parameters of Ratcliff ’s (1978) diffusion model from the empirical response time distributions...
  • DMAT

  • Referenced in 10 articles [sw09191]
  • DMAT is short for the Diffusion Model Analysis Toolbox. It is a MATLAB™ toolbox ... fitting Ratcliff’s diffusion model to reaction time and accuracy data. There are currently...
  • parDG

  • Referenced in 21 articles [sw18743]
  • which belong to the class of Diffuse-Interface models. We develop efficient and reliable numerical...
  • ToSCA

  • Referenced in 6 articles [sw04242]
  • extension of the widely accepted drift-diffusion model which consists in the van Roosbroeck system ... this element. In the drift-diffusion model the temperature is a constant parameter. An electric ... described by means of the drift-diffusion model. H. Gajewski and co- workers implemented ... dimensional version of the drift-diffusion model in the program package TOSCA. This package...
  • STEPS

  • Referenced in 18 articles [sw17866]
  • STEPS: Modeling and Simulating Complex Reaction-Diffusion Systems with Python. We describe ... simulation platform for modeling and stochastic simulation of coupled reaction-diffusion systems with complex...
  • KFAS

  • Referenced in 19 articles [sw14662]
  • multivariate exponential family state space models with exact diffuse initialization and sequential processing...
  • URDME

  • Referenced in 26 articles [sw10400]
  • software framework for general stochastic reaction-transport modeling and simulation. URDME uses Unstructured triangular ... relies on the Reaction-Diffusion Master Equation formalism to model the processes under study...
  • WIAS-TeSCA

  • Referenced in 9 articles [sw04045]
  • based on the drift-diffusion model and considers a multitude of additional physical effects, like...
  • diffIRT

  • Referenced in 6 articles [sw24166]
  • package diffIRT: Diffusion IRT Models for Response and Response Time Data. Package to fit diffusion ... tools are also available. The traditional diffusion model can be estimated as well...
  • MRtrix

  • Referenced in 11 articles [sw19840]
  • clinicians are typically based on the diffusion tensor model, which has comprehensively been shown...
  • CRASH

  • Referenced in 7 articles [sw18109]
  • hydrodynamics. The implementation solves the radiation diffusion model with a gray or multi-group method ... implicit solution of the stiff radiation diffusion, heat conduction, and energy exchange. We present ... part of the publicly available Space Weather Modeling Framework...
  • ICF3D

  • Referenced in 9 articles [sw03509]
  • prisms, pyramids, and/or tetrahedra. The hydrodynamics is modeled by discontinuous finite element method which allows ... shocks. Continuous processes such as diffusion are modeled by conventional finite element methods. ICF3D ... heat conduction, and multi-group radiation transport (diffusion approximation) packages. We present results on problems...
  • jags-wiener

  • Referenced in 6 articles [sw39525]
  • custom distributions to JAGS (with a diffusion model example). We demonstrate ... general-purpose, open-source, cross-platform graphical modeling package JAGS (“Just Another Gibbs Sampler”). JAGS ... further present our implementation of the Wiener diffusion first-passage time distribution, which is freely...
  • rtdists

  • Referenced in 5 articles [sw15284]
  • function, and random generation): (a) Ratcliff diffusion model based on C code by Andreas...
  • ROMS

  • Referenced in 35 articles [sw30140]
  • three-dimensional, free-surface, terrain-following numerical models. Noteworthy characteristics of the ROMS computational kernel ... less diffusive, solutions than those produced in earlier terrain-following ocean models. Together with advanced...
  • XTOR

  • Referenced in 21 articles [sw03221]
  • physics in the model includes resistive MHD, anisotropic thermal diffusion and some neoclassical effects...