• POGS

  • Referenced in 9 articles [sw26997]
  • convex optimization problems in graph form using Alternating Direction Method of Multipliers (ADMM...
  • CLEAN

  • Referenced in 58 articles [sw01346]
  • language Clean among which it’s Term Graph Rewriting semantics. Of particular importance for practical ... arbitrary objects and the creation of direct interfaces with the outside world, all within...
  • Blast2GO

  • Referenced in 6 articles [sw29668]
  • statistical analysis and highlighted visualization on directed acyclic graphs. This tool offers a suitable platform...
  • Snugglebug

  • Referenced in 6 articles [sw13707]
  • such analysis. First, we present directed call graph construction, where call graph construction and symbolic...
  • GraphTheory

  • Referenced in 7 articles [sw15923]
  • edges. The package supports both directed and undirected graphs but not multigraphs. The edges...
  • MetNetAligner

  • Referenced in 2 articles [sw25791]
  • efficiently finds optimal mappings from a directed graph with restricted cyclic structure to an arbitrary ... directed graph. AVAILABILITY: MetNetAligner is available as web-server at: http://alla.cs.gsu.edu:8080/MinePW/pages/gmapping/GMMain.html....
  • plotly

  • Referenced in 15 articles [sw19338]
  • based visualizations directly from R. Once uploaded to a ’plotly’ account, ’plotly’ graphs...
  • ADD-OPT

  • Referenced in 3 articles [sw25783]
  • described by a strongly-connected, emph{directed} graph. The proposed algorithm, ADD-OPT (Accelerated Distributed...
  • AS 140

  • Referenced in 3 articles [sw14175]
  • Clustering the Nodes of a Directed Graph...
  • NetLSD

  • Referenced in 4 articles [sw32341]
  • together. Graph comparisons still rely on direct approaches, graph kernels, or representation-based methods, which...
  • Algorithm 815

  • Referenced in 3 articles [sw13170]
  • vertex and arc set problems on directed graphs using a Greedy Randomized Adaptive Search Procedure...
  • PageRank

  • Referenced in 3 articles [sw13758]
  • compute the PageRank vector for a directed graph. The Pagerank package provides a single driver...
  • MOAB

  • Referenced in 3 articles [sw17502]
  • from sets containing other sets. The directed-graph provided by set parent/child relationships is useful...
  • causaleffect

  • Referenced in 5 articles [sw11067]
  • which contain unobserved variables and induce directed acyclic graphs...
  • dagitty

  • Referenced in 5 articles [sw16593]
  • structural causal models (also known as directed acyclic graphs or DAGs). This package computes covariate...
  • VLTS Benchmark Suite

  • Referenced in 5 articles [sw09810]
  • Each Labelled Transition System is a directed, connected graph, whose vertices are called states...
  • Grapham

  • Referenced in 5 articles [sw08541]
  • with emphasis on graphical models for directed acyclic graphs. The implemented algorithms include the seminal...
  • ECgene

  • Referenced in 4 articles [sw17328]
  • connectivity in each cluster as a directed acyclic graph (DAG). Distinct paths along exons correspond...
  • dodgr

  • Referenced in 1 article [sw39809]
  • package dodgr: Distances on Directed Graphs. Distances on dual-weighted directed graphs using priority-queue ... Padgham (2019) ). Weighted directed graphs have weights from A to B which ... from B to A. Dual-weighted directed graphs have two sets of such weights ... lengths of routes must be calculated from direct distances...
  • MolGAN

  • Referenced in 2 articles [sw36059]
  • small molecular graphs. Deep generative models for graph-structured data offer a new angle ... optimizing differentiable models that directly generate molecular graphs, it is possible to side-step expensive ... generative adversarial networks (GANs) to operate directly on graph-structured data. We combine our approach ... likelihood-based method that directly generates graphs, albeit being susceptible to mode collapse...