• Dendrix

  • Referenced in 3 articles [sw34274]
  • algorithm for discovery of mutated driver pathways in cancer using only mutation data. It finds...
  • DriverNet

  • Referenced in 1 article [sw23966]
  • DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer. Simultaneous interrogation ... despite the essential need to separate driver mutations modulating gene expression networks from transcriptionally inert ... computational framework, DriverNet, to identify likely driver mutations by virtue of their effect on mRNA ... reveals the prevalence of rare candidate driver mutations associated with disrupted transcriptional networks...
  • DriverFinder

  • Referenced in 1 article [sw34273]
  • named DriverFinder, to identify driver genes by integrating somatic mutations, copy number variations, gene-gene ... driver genes and identify some rare mutated driver genes...
  • WExT

  • Referenced in 1 article [sw15825]
  • Mutually Exclusive Mutations in Cancer. The somatic mutations in the pathways that drive cancer development ... tumors, providing a signal for distinguishing driver mutations from a larger number of random passenger...
  • MUFFINN

  • Referenced in 1 article [sw23967]
  • recent availability of unprecedented amounts of somatic mutation data from cancer patients has opened ... major challenge in distinguishing cancer-causing driver mutations from inconsequential passenger mutations is, however...
  • DEOD

  • Referenced in 2 articles [sw23965]
  • cancer-driver genes. It integrates matched copy number, gene expression and mutation data...
  • Fortran-GA

  • Referenced in 8 articles [sw05064]
  • FORTRAN Genetic Algorithm (GA) Driver. Very briefly, a genetic algorithm is a search/optimization technique based ... more modern GA concepts such as creep mutations, uniform crossover, niching, and elitism (whereas ... unknowns for my FORTRAN GA front-end driver code, I have decided to add this...
  • Matlab

  • Referenced in 13460 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9810 articles [sw00771]
  • R is a language and environment for statistical...
  • Genocop

  • Referenced in 1099 articles [sw04707]
  • Genocop, by Zbigniew Michalewicz, is a genetic algorithm...
  • z3

  • Referenced in 590 articles [sw04887]
  • Z3 is a high-performance theorem prover being...
  • GAMS

  • Referenced in 865 articles [sw04978]
  • The General Algebraic Modeling System (GAMS) is specifically...
  • NumPy

  • Referenced in 537 articles [sw06294]
  • NumPy is the fundamental package for scientific computing...
  • SPOT

  • Referenced in 87 articles [sw06347]
  • SPOT: Sequential Parameter Optimization , R-Package for Sequential...
  • MOEA/D

  • Referenced in 274 articles [sw06583]
  • MOEA/D framework. An experimental analysis of evolutionary heuristics...
  • SPEA2

  • Referenced in 485 articles [sw06686]
  • SPEA2 - The Strength Pareto Evolutionary Algorithm 2: SPEA2...
  • GATK

  • Referenced in 17 articles [sw12019]
  • The genome analysis toolkit: a MapReduce framework for...
  • KEGG

  • Referenced in 275 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...
  • Samtools

  • Referenced in 22 articles [sw14583]
  • Samtools is a suite of programs for interacting...