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  • Cytoscape
  • Referenced in 81 articles [sw09080]
  • Cytoscape: A Software Environment for Integrated Models of...

  • COPASI
  • Referenced in 71 articles [sw12253]
  • COPASI: biochemical network simulator. COPASI is a software...

  • Dynagraph
  • Referenced in 15 articles [sw13656]
  • The Dynagraph libraries are written in platform-neutral...

  • BioNet
  • Referenced in 5 articles [sw13828]
  • The BioNet package provides an extensive framework for...

  • KEGG
  • Referenced in 281 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...

  • Python
  • Referenced in 2164 articles [sw14460]
  • Python is a widely used high-level, general...

  • RedeR
  • Referenced in 2 articles [sw14646]
  • RedeR: R/Bioconductor package for representing modular structures, nested...

  • Cellnoptr
  • Referenced in 5 articles [sw15114]
  • CellNOpt (from CellNetOptimizer; a.k.a. CNO) is a software...

  • AUTO-MUTE
  • Referenced in 9 articles [sw16878]
  • AUTO-MUTE: web-based tools for predicting stability...

  • iPath
  • Referenced in 3 articles [sw16937]
  • iPath: interactive exploration of biochemical pathways and networks...

  • TopHat
  • Referenced in 23 articles [sw17157]
  • TopHat2: accurate alignment of transcriptomes in the presence...

  • GEOquery
  • Referenced in 10 articles [sw17285]
  • GEOquery: a bridge between the Gene Expression Omnibus...

  • inSilicoDb
  • Referenced in 2 articles [sw17288]
  • inSilicoDb: an R/Bioconductor package for accessing human Affymetrix...

  • BioGRID

  • Referenced in 48 articles [sw17422]
  • BioGRID: A general repository for interaction datasets. Access...

  • CellNOpt
  • Referenced in 2 articles [sw19834]
  • CellNOpt (from CellNetOptimizer; a.k.a. CNO) is a software...

  • IntAct
  • Referenced in 31 articles [sw21665]
  • IntAct:an open source molecular interaction database. IntAct...

  • AFP-Pred
  • Referenced in 24 articles [sw22441]
  • AFP-Pred: A random forest approach for predicting...

  • Quat-2L
  • Referenced in 15 articles [sw22469]
  • Quat-2L: a web-server for predicting protein...

  • ClueGO
  • Referenced in 9 articles [sw22916]
  • ClueGO is a Cytoscape plug-in that visualizes...