• Cytoscape

  • Referenced in 81 articles [sw09080]
  • Cytoscape: A Software Environment for Integrated Models of...
  • COPASI

  • Referenced in 71 articles [sw12253]
  • COPASI: biochemical network simulator. COPASI is a software...
  • Dynagraph

  • Referenced in 15 articles [sw13656]
  • The Dynagraph libraries are written in platform-neutral...
  • BioNet

  • Referenced in 5 articles [sw13828]
  • The BioNet package provides an extensive framework for...
  • KEGG

  • Referenced in 281 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...
  • Python

  • Referenced in 2164 articles [sw14460]
  • Python is a widely used high-level, general...
  • RedeR

  • Referenced in 2 articles [sw14646]
  • RedeR: R/Bioconductor package for representing modular structures, nested...
  • Cellnoptr

  • Referenced in 5 articles [sw15114]
  • CellNOpt (from CellNetOptimizer; a.k.a. CNO) is a software...
  • AUTO-MUTE

  • Referenced in 9 articles [sw16878]
  • AUTO-MUTE: web-based tools for predicting stability...
  • iPath

  • Referenced in 3 articles [sw16937]
  • iPath: interactive exploration of biochemical pathways and networks...
  • TopHat

  • Referenced in 23 articles [sw17157]
  • TopHat2: accurate alignment of transcriptomes in the presence...
  • GEOquery

  • Referenced in 10 articles [sw17285]
  • GEOquery: a bridge between the Gene Expression Omnibus...
  • inSilicoDb

  • Referenced in 2 articles [sw17288]
  • inSilicoDb: an R/Bioconductor package for accessing human Affymetrix...
  • BioGRID

  • Referenced in 48 articles [sw17422]
  • BioGRID: A general repository for interaction datasets. Access...
  • CellNOpt

  • Referenced in 2 articles [sw19834]
  • CellNOpt (from CellNetOptimizer; a.k.a. CNO) is a software...
  • IntAct

  • Referenced in 31 articles [sw21665]
  • IntAct:an open source molecular interaction database. IntAct...
  • AFP-Pred

  • Referenced in 24 articles [sw22441]
  • AFP-Pred: A random forest approach for predicting...
  • Quat-2L

  • Referenced in 15 articles [sw22469]
  • Quat-2L: a web-server for predicting protein...
  • ClueGO

  • Referenced in 9 articles [sw22916]
  • ClueGO is a Cytoscape plug-in that visualizes...