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SnapPea
- Referenced in 163 articles
[sw06873]
- fact admit hyperbolic structures, to remove duplicates from the lists and to compute the various...
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Notung
- Referenced in 13 articles
[sw08917]
- NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Tree. Large scale gene ... duplication is a major force driving the evolution of genetic functional innovation. Whole genome duplications ... trees to analyze the history of gene duplication and estimate duplication times provides a powerful ... provides a basic building block for inferring duplication dates from gene trees automatically...
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SCIRun
- Referenced in 22 articles
[sw06756]
- SCIRun are flexible enough to enable duplication of networks and creation of new modules. Many...
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STRIP
- Referenced in 15 articles
[sw04650]
- main characteristics: it deals with the duplication of formulae during proof-search from a fine...
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PANTHER
- Referenced in 15 articles
[sw22973]
- evolutionary events, such as speciation and gene duplication. Subfamilies are still curated and used...
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MSOAR
- Referenced in 7 articles
[sw29658]
- genome rearrangement. - MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement. Background ... terms of genome rearrangement and gene duplication events. It assumes that a gene duplication event ... inserts a duplicated gene into the genome of interest at a random location ... random duplication model). However, in practice, biologists believe that genes are often duplicated by tandem...
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Genetree
- Referenced in 13 articles
[sw01308]
- display the location and number of gene duplications andlosses, and search for optimal species trees...
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Sacado
- Referenced in 13 articles
[sw06602]
- approaches result in a large amount of duplicate computation, particularly for large expression trees, degrading...
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iRO-3wPseKNC
- Referenced in 13 articles
[sw27669]
- very powerful for predicting the entire DNA duplication origins. Availability and implementation: The web-server...
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STAR
- Referenced in 9 articles
[sw35644]
- Tandem Repeat (ETR) comes from the tandem duplication of the motif and an ATR derives ... then be encoded as a number of duplications of the motif together with a list...
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Koka
- Referenced in 11 articles
[sw19068]
- support polymorphic effects through row-polymorphism using duplicate labels. Moreover, we show that our effects...
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Polyglot
- Referenced in 10 articles
[sw08834]
- languages similar to Java, while avoiding code duplication. The Polyglot framework is useful for domain...
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iGTP
- Referenced in 5 articles
[sw23050]
- evolutionary events such as gene duplication and loss, incomplete lineage sorting (deep coalescence), and horizontal ... speed up species tree inference under the duplication, duplication-loss, and deep coalescence reconciliation costs ... genes from hundreds of taxa using the duplication, duplication-loss, and deep coalescence reconciliation costs...
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Beanplot
- Referenced in 9 articles
[sw10545]
- data, such as bimodal distributions and duplicate measurements, are easily spotted in a beanplot...
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Eisbach
- Referenced in 8 articles
[sw13077]
- proof procedures. This can lead to more duplication in large proofs than is acceptable...
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iROS-gPseKNC
- Referenced in 8 articles
[sw25363]
- strategy against genetics diseases, the knowledge of duplication origin sites in DNA is indispensible. With...
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PAW
- Referenced in 8 articles
[sw32834]
- analysis and display procedures that would be duplicated needlessly by individual programmers, to supply...
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SimPhy
- Referenced in 5 articles
[sw17058]
- families evolving under incomplete lineage sorting, gene duplication and loss, horizontal gene transfer—all three ... characterize the systematic overestimation of the duplication time when using standard reconciliation methods. SimPhy...
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MGTP
- Referenced in 7 articles
[sw09701]
- clauses, a proof simplification method to eliminate duplicated subproofs, and MM-MGTP for minimal model...
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ecceTERA
- Referenced in 6 articles
[sw24891]
- parsimony reconciliation algorithm, which accounts for gene duplication, loss and transfer (DTL) as well...