• Algorithm 447

  • Referenced in 163 articles [sw12877]
  • paths. The algorithm for partitioning of a graph into simple paths of iterative and each ... paths. (The start vertex can be specified dynamically.) If V is the number of vertices ... when executed on a random access computer...
  • SNAP

  • Referenced in 171 articles [sw04184]
  • random graphs, and supports attributes on nodes and edges. Besides scalability to large graphs ... attributes in a graph or a network can be changed dynamically during the computation. SNAP...
  • QSWalk.m

  • Referenced in 4 articles [sw27610]
  • Walks (QSWs) on arbitrary directed and weighted graphs. QSWs are a generalization of continuous time ... incoherent dynamics and as such, include both quantum walks and classical random walks as special ... component allows for quantum walks along directed graph edges. The dynamics of QSWs are expressed...
  • BH

  • Referenced in 5 articles [sw17762]
  • time’ ’detail’ ’dynamic_bitset’ ’exception’ ’filesystem’ ’flyweight’ ’foreach’ ’functional’ ’fusion’ ’geometry’ ’graph’ ’heap’ ’icl’ ’integer ... multiprcecision’ ’numeric’ ’pending’ ’phoenix’ ’preprocessor’ ’propery_tree’ ’random’ ’range’ ’scope_exit’ ’smart_ptr’ ’spirit’ ’tuple...
  • EcoLab

  • Referenced in 6 articles [sw26811]
  • widgets. Various graphs and histogramming tools are available for use. The same model ... different script. The model can be probed dynamically with the object browser. The model ... visualisation client. Various types of random number generators are available through the UNURAN library...
  • Jsnetworkx

  • Referenced in 1 article [sw20730]
  • port of the popular Python graph library NetworkX. From their website: NetworkX is a Python ... creation, manipulation, and study of the structure, dynamics, and function of complex networks. With NetworkX ... nonstandard data formats, generate many types of random and classic networks, analyze network structure, build ... much more. JSNetworkX aims to bring graph processing to JavaScript, client- and server-side...
  • LNetReduce

  • Referenced in 1 article [sw42168]
  • tool that simplifies linear dynamic networks. Dynamic networks are represented as digraphs labeled by integer ... stochastic monomolecular chemical reaction networks, but also random walks on weighted protein-protein interaction networks ... obtained by graph and label rewriting rules and reproduces the full network dynamics with good...
  • McVol

  • Referenced in 2 articles [sw20199]
  • based neighbor list to determine whether a random point is placed inside the molecule ... This method in combination with a graph-theoretical algorithm is used to detect internal cavities ... water positions can be used in molecular dynamics calculations as well as in other molecular...
  • ProtNet

  • Referenced in 1 article [sw29365]
  • stochastic simulations of protein interaction networks dynamics. Background: Protein interactions support cell organization and mediate ... interactome. These data are usually presented as graphs where proteins (nodes) are linked by edges ... other kinds of complex networks, are not randomly organized and display properties that are typical ... static and provides no clue about the dynamic nature of protein interactions inside the cell...
  • PolyRandGrpah

  • Referenced in 1 article [sw34880]
  • viewed as a time-continuos random graph process with degree bounds that are not necessarily ... connected components features a rich temporal dynamics that includes: switching between exponential and algebraic asymptotes...
  • GraphEBM

  • Referenced in 1 article [sw37859]
  • work, we propose GraphEBM to generate molecular graphs using energy-based models. In particular ... making GraphEBM permutation invariant. We apply Langevin dynamics to train the energy function by approximately ... compositional manner. Comprehensive experimental results on random, goal-directed, and compositional generation tasks demonstrate...
  • ADOL-C

  • Referenced in 249 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • ANSYS

  • Referenced in 704 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • ARMS

  • Referenced in 65 articles [sw00048]
  • ARMS: an algebraic recursive multilevel solver for general...
  • ATLAS

  • Referenced in 199 articles [sw00056]
  • This paper describes the Automatically Tuned Linear Algebra...
  • BARON

  • Referenced in 354 articles [sw00066]
  • BARON is a computational system for solving nonconvex...
  • BoomerAMG

  • Referenced in 196 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • CGAL

  • Referenced in 394 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • Coq

  • Referenced in 1890 articles [sw00161]
  • Coq is a formal proof management system. It...