• sedaR

  • Referenced in 65 articles [sw04568]
  • devoted to the analysis of spatial ecological multivariate data. Below is a list ... packages provided by project Spatial ecological data analysis with R: AEM, PCNM, hubbell, mefaspat, metapop...
  • ade4

  • Referenced in 47 articles [sw04566]
  • Ecological Data : Exploratory and Euclidean methods in Environmental sciences , Multivariate data analysis and graphical display...
  • GMRFLib

  • Referenced in 308 articles [sw06641]
  • analysis of longitudinal and survival data, spatio-temporal models, graphical models, and semi-parametric statistics ... researchers in engineering, epidemiology, image analysis, geography, and ecology, introducing them to this powerful statistical...
  • PAUP*

  • Referenced in 57 articles [sw07834]
  • high-speed computer analysis of molecular, morphological and/or behavioral data to infer phylogenetic relationships ... biology, ecology, and forensic studies. The success of previous versions of PAUP: Phylogenetic Analysis Using ... serving as a comprehensive introduction to phylogenetic analysis for beginning researchers, as well ... agreement subtrees to tests for combinability of data and permutation tests for nonrandomness of data...
  • EcoSimR

  • Referenced in 3 articles [sw28374]
  • package EcoSimR: Null Model Analysis for Ecological Data. Given a site by species interaction matrix ... underlying assumptions of null model analysis in ecology can be found at http://ecosimr.org...
  • ecodist

  • Referenced in 8 articles [sw10008]
  • ecodist: Dissimilarity-based functions for ecological analysis: Dissimilarity-based analysis functions including ordination and Mantel ... intended for use with spatial and community data...
  • rWind

  • Referenced in 2 articles [sw31313]
  • Wind and Sea Currents Data in Ecological and Evolutionary Analysis. Tools for download and manage...
  • PAST

  • Referenced in 6 articles [sw14247]
  • fitting, time-series analysis, data plotting, and simple phylogenetic analysis. Many of the functions ... specific to paleontology and ecology, and these functions are not found in standard, more extensive ... packages. PAST also includes fourteen case studies (data files and exercises) illustrating...
  • categorical

  • Referenced in 10 articles [sw13141]
  • both a data analysis method and a learning tool requiring no prior experience with ... ecology, and other areas, along with extensive R code and output. The authors use data ... features and properties of various analysis methods. Web Resource: The data sets and R programs...
  • maed2

  • Referenced in 1 article [sw13142]
  • Multivariate analysis of ecological data using CANOCO 5. This revised and updated edition focuses...
  • Geoxp

  • Referenced in 7 articles [sw08289]
  • data analysis. GeoXp is a tool for researchers in spatial statistics, spatial econometrics, geography, ecology ... most of the multidimensionality of the data, GeoXp includes some dimension reduction techniques such...
  • blmeco

  • Referenced in 0 articles [sw31412]
  • Functions Accompanying the Book ”Bayesian Data Analysis in Ecology using R, BUGS and Stan”. Data ... Almasi, Korner-Nievergelt (2015) ”Bayesian Data Analysis in Ecology using R, BUGS and Stan”, Elsevier...
  • Phyloseq

  • Referenced in 8 articles [sw13730]
  • Graphics of Microbiome Census Data. Background: The analysis of microbial communities through DNA sequencing brings ... integration of different types of data with methods from ecology, genetics, phylogenetics, multivariate statistics, visualization...
  • eipack

  • Referenced in 3 articles [sw26624]
  • using the extreme case analysis, ecological regression, and Multinomial-Dirichlet ecological inference models. Also provides ... tools for manipulating higher-dimension data objects...
  • AGS

  • Referenced in 1 article [sw41544]
  • metagenomes of TARA Oceans and revealed the ecological strategies associated with different water layers. Conclusion ... improve their metagenomic data analysis to gain deeper insights into microorganisms’ ecology. The ags.sh...
  • MorphoJ

  • Referenced in 2 articles [sw08244]
  • molecular genetic or ecological information, so that tools for geometric morphometric analysis are required. Morphometric ... arrangements of morphological landmarks as the data source and extract shape information from them...
  • EMbC

  • Referenced in 1 article [sw27360]
  • data. A specific constructor for trajectory analysis in movement ecology yields behavioural annotation of trajectories...
  • Bio7

  • Referenced in 2 articles [sw23164]
  • many ecological analyses powerful statistical tools are required for a profound analysis of spatial ... time based data sets. In order to avoid many common errors of analysis and data ... focus on the task of the analysis and minimize the time to fulfill certain tasks ... user interface for R embedded in the ecological modeling software Bio7 which is based...
  • TpsDig2

  • Referenced in 3 articles [sw18407]
  • facilitate the statistical analysis of landmark data in morphometrics by making it easier to collect ... maintain landmark data from digitized images” (Rohlf, F. J. 2004. tpsDig, digitize landmarks and outlines ... version 2.0. Department of Ecology and Evolution, State University of New York at Stony Brook...
  • structSSI

  • Referenced in 3 articles [sw24357]
  • Selective Inference for Grouped or Hierarchically Structured Data. The R package structSSI provides an accessible ... using two examples, one a measure of ecological microbial abundances and the other a global ... steps associated with the analysis of these particular data sets, including establishing the dependence structures...