• feeLLGood

  • Referenced in 9 articles [sw18093]
  • must conserve the magnetization norm, which is a nonconvex constraint, and be energy-decreasing unless...
  • HOMISBOLTZ

  • Referenced in 3 articles [sw06049]
  • from satisfying the conservation of particle number and energy (momentum is trivial for this test...
  • Ocellaris

  • Referenced in 2 articles [sw39197]
  • that conserves mass and stops unbounded energy growth caused by the Gibbs phenomenon...
  • mb4-nls2d

  • Referenced in 1 article [sw38939]
  • parallelizable energy-preserving integrator MB4 and its application to quantum-mechanical wavepacket ... dynamics. In simulating physical systems, conservation of the total energy is often essential, especially when...
  • Cobra-sfs

  • Referenced in 1 article [sw18297]
  • volume equations representing the conservation equations for mass, moment, and energy for an incompressible single...
  • WHAM

  • Referenced in 11 articles [sw18138]
  • remains difficult to simulate is when the energy scales (kinetic, thermal, magnetic) within the plasma ... integral of the fluxes, converts cell-averaged conserved quantities to point-conserved quantities before performing ... flows and maintains accuracy even when the energy scales in the flow are highly disparate...
  • AAISIM

  • Referenced in 1 article [sw31789]
  • porous-fluid interface, the conservation equations of mass, energy, turbulent kinetic energy, specific dissipation rate...
  • MARNA

  • Referenced in 5 articles [sw35539]
  • weights reflect the sequential and structural conservation. For sequences whose secondary structures are missing ... libraries are generated by sampling low energy conformations. The libraries are then processed...
  • LILIX

  • Referenced in 13 articles [sw00520]
  • with uniform accuracy with respect to the energy. The package contains three main subroutines ... points of the partition. Subroutine RENORM helps conserving the linear independence of various vectors...
  • bond_graph_cardiac_AP

  • Referenced in 2 articles [sw39192]
  • general and systematic method of identifying conservation laws hidden in models of cardiac electrophysiology ... energy-based framework for modelling physical systems, which makes them well suited for examining conservation...
  • CMfinder

  • Referenced in 6 articles [sw17265]
  • automatic, high quality identification and characterization of conserved RNA motifs that can be readily used ... that blends mutual information-based and folding energy-based approaches to predict structure ... including some difficult cases with poor sequence conservation and large indels, our method demonstrates excellent...
  • SPICE

  • Referenced in 2 articles [sw14773]
  • input two ingredients: a standard flavor-conserving supersymmetric spectrum and a set of flavor-violating ... flavor-violating model, determines the resulting low-energy spectrum and branching ratios, and outputs SPICE ... used to generate collider events. The flavor-conserving model may be any of the standard...
  • COSMOCR

  • Referenced in 7 articles [sw02255]
  • diffusive shock acceleration, the mechanical and radiative energy losses and the spatial transport ... background nuclei. The code consists of a conservative, finite volume method with a power...
  • CRASH

  • Referenced in 7 articles [sw18109]
  • Eulerian frame by means of a conservative finite-volume discretization in either ... stiff radiation diffusion, heat conduction, and energy exchange. We present a suite of verification test...
  • SEREN

  • Referenced in 3 articles [sw31628]
  • without compromising performance. SEREN uses the conservative `grad-h’ formulation of SPH, but can easily ... equation of state, or by solving the energy equation and modelling the transport of cooling...
  • GtRNAdb

  • Referenced in 2 articles [sw23001]
  • single nucleotide polymorphisms, gene expression and evolutionary conservation. A richer set of analytic data ... impacts from sequence variants and minimum free energy structural predictions. Views of tRNA genes...
  • iScore

  • Referenced in 1 article [sw33181]
  • scoring docked conformations that combines HADDOCK energy terms with a score obtained using a graph ... protein interfaces and a measure of evolutionary conservation. It achieves a scoring performance competitive with...
  • EPISO

  • Referenced in 4 articles [sw02494]
  • motored reciprocating engines. Firstly the three-dimensional conservation equations governing the flow processes in asymmetric ... model, in this case the turbulence kinetic energy and its dissipation rate. The EPISO (Engine...
  • EFDC

  • Referenced in 1 article [sw18277]
  • Dynamically-coupled transport equations for turbulent kinetic energy, turbulent length scale, salinity and temperature ... wetting in shallow areas by a mass conservation scheme. The physics of the EFDC model...
  • REBOUNDx

  • Referenced in 2 articles [sw42239]
  • ability to model the long-term, conservative dynamics of planetary systems. However, many astrophysically important ... that so-called `symplectic correctors’ (which reduce energy errors by orders of magnitude at fixed ... forces, but give qualitatively wrong answers for conservative but velocity-dependent forces like post-Newtonian...