• # mb4-nls2d

• Referenced in 1 article [sw38939]
• parallelizable energy-preserving integrator MB4 and its application to quantum-mechanical wavepacket ... dynamics. In simulating physical systems, conservation of the total energy is often essential, especially when...
• # WHAM

• Referenced in 11 articles [sw18138]
• remains difficult to simulate is when the energy scales (kinetic, thermal, magnetic) within the plasma ... integral of the fluxes, converts cell-averaged conserved quantities to point-conserved quantities before performing ... flows and maintains accuracy even when the energy scales in the flow are highly disparate...
• # MARNA

• Referenced in 5 articles [sw35539]
• weights reflect the sequential and structural conservation. For sequences whose secondary structures are missing ... libraries are generated by sampling low energy conformations. The libraries are then processed...
• # LILIX

• Referenced in 13 articles [sw00520]
• with uniform accuracy with respect to the energy. The package contains three main subroutines ... points of the partition. Subroutine RENORM helps conserving the linear independence of various vectors...
• # bond_graph_cardiac_AP

• Referenced in 2 articles [sw39192]
• general and systematic method of identifying conservation laws hidden in models of cardiac electrophysiology ... energy-based framework for modelling physical systems, which makes them well suited for examining conservation...
• # CMfinder

• Referenced in 6 articles [sw17265]
• automatic, high quality identification and characterization of conserved RNA motifs that can be readily used ... that blends mutual information-based and folding energy-based approaches to predict structure ... including some difficult cases with poor sequence conservation and large indels, our method demonstrates excellent...
• # SPICE

• Referenced in 2 articles [sw14773]
• input two ingredients: a standard flavor-conserving supersymmetric spectrum and a set of flavor-violating ... flavor-violating model, determines the resulting low-energy spectrum and branching ratios, and outputs SPICE ... used to generate collider events. The flavor-conserving model may be any of the standard...
• # COSMOCR

• Referenced in 7 articles [sw02255]
• diffusive shock acceleration, the mechanical and radiative energy losses and the spatial transport ... background nuclei. The code consists of a conservative, finite volume method with a power...
• # CRASH

• Referenced in 7 articles [sw18109]
• Eulerian frame by means of a conservative finite-volume discretization in either ... stiff radiation diffusion, heat conduction, and energy exchange. We present a suite of verification test...
• # SEREN

• Referenced in 3 articles [sw31628]
• without compromising performance. SEREN uses the conservative grad-h’ formulation of SPH, but can easily ... equation of state, or by solving the energy equation and modelling the transport of cooling...

• Referenced in 2 articles [sw23001]
• single nucleotide polymorphisms, gene expression and evolutionary conservation. A richer set of analytic data ... impacts from sequence variants and minimum free energy structural predictions. Views of tRNA genes...
• # iScore

• Referenced in 1 article [sw33181]
• scoring docked conformations that combines HADDOCK energy terms with a score obtained using a graph ... protein interfaces and a measure of evolutionary conservation. It achieves a scoring performance competitive with...
• # EPISO

• Referenced in 4 articles [sw02494]
• motored reciprocating engines. Firstly the three-dimensional conservation equations governing the flow processes in asymmetric ... model, in this case the turbulence kinetic energy and its dissipation rate. The EPISO (Engine...
• # EFDC

• Referenced in 1 article [sw18277]
• Dynamically-coupled transport equations for turbulent kinetic energy, turbulent length scale, salinity and temperature ... wetting in shallow areas by a mass conservation scheme. The physics of the EFDC model...
• # REBOUNDx

• Referenced in 2 articles [sw42239]
• ability to model the long-term, conservative dynamics of planetary systems. However, many astrophysically important ... that so-called symplectic correctors’ (which reduce energy errors by orders of magnitude at fixed ... forces, but give qualitatively wrong answers for conservative but velocity-dependent forces like post-Newtonian...