• energy

  • Referenced in 90 articles [sw08072]
  • class of statistics based on distances. Energy distance is a statistical distance between the distributions ... energy between statistical observations. Energy statistics are functions of distances between statistical observations in metric ... real valued nonnegative distances for inference. Theory and application of energy statistics are discussed...
  • GLOPEQ

  • Referenced in 15 articles [sw07709]
  • that (i) the total Gibbs free energy of the system be at its global minimum ... minimum of the tangent plane distance function be nonnegative for all phase models used ... global minimum of the Gibbs free energy as efficiently as possible, for cases where ... free energy, denoted (G), and (ii) the minimization of the tangent plane distance function...
  • ViennaRNA

  • Referenced in 23 articles [sw10504]
  • optimal energy. For secondary structure comparison, the package contains several measures of distance (dissimilarities) using...
  • EDAS

  • Referenced in 1 article [sw02764]
  • EDAS: Energy and distance aware protocol based on SPIN for wireless sensor networks Energy-efficient ... data dissemination protocol is proposed, called Energy and Distance Aware protocol based on SPIN (EDAS ... both the residual energy and the most efficient distance between the nodes, to determine ... Simulation results show that the EDAS guarantees energy-efficient transmission and moreover increases the network...
  • EpicFlow

  • Referenced in 8 articles [sw31215]
  • sparse set of matches; ii) variational energy minimization initialized with the dense matches. The sparse ... relies on an appropriate choice of the distance, namely an edge-aware geodesic distance. This ... propose an approximation scheme for the geodesic distance to allow fast computation without loss ... dense interpolation step, standard one-level variational energy minimization is carried out on the dense...
  • HContinuumGautchi

  • Referenced in 1 article [sw10274]
  • calculated at extremely low energies, large radial distances and/or large angular momentum number. Here ... electron energy range $[10^{- 3},10^{3}]$ eV for radial distances...
  • TINKER

  • Referenced in 10 articles [sw04095]
  • dynamics, pairwise neighbor lists and splined spherical energy cutoff methods, particle mesh Ewald (PME) summation ... field treatment of long range electrostatics, fast distance geometry metrization with better sampling than standard...
  • FFTbor2D

  • Referenced in 2 articles [sw11717]
  • program FFTbor2D computes the ensemble free energy ... over all secondary structures having base pair distance x from A,and base pair distance ... Package program RNA2Dfold computes the ensemble free energy in time O(n7) and space...
  • NSOL

  • Referenced in 2 articles [sw21620]
  • solvation energy calculation is needed. However, solvation energy calculation (implicit water, PB, RISM ... using distance dependent dielectric constant. While, there exist two methods that calculate solvation energy using...
  • RNA2Dfold

  • Referenced in 2 articles [sw11716]
  • each distance class, the MFE representative, Boltzmann probabilities and Gibbs free energy is computed. Additionally...
  • RNACluster

  • Referenced in 2 articles [sw23124]
  • distance and our in-house structure matrix distance, and one effective cluster approach ... structures, RNA structure conformational switches, RNA conformational energy landscapes and RNA secondary structure prediction based...
  • Chisel

  • Referenced in 1 article [sw22893]
  • accuracy of an approximate computation is the distance between the result that the computation produces ... approximate operations that, in return for reduced energy consumption and/or increased performance, exhibit reduced reliability...
  • p4vasp

  • Referenced in 1 article [sw35730]
  • density, local potential, forces, velocities, dynamics, measure distances and angles. Simple structure editor, supports both ... visualization. Inspection of convergence - size of free energy and selected forces along relaxation path. Phonon...
  • EASAL

  • Referenced in 1 article [sw27195]
  • point-sets that are pairwise constrained by distance intervals, the EASAL software implements a suite ... applications such as the computation of free energy and kinetics of assembly of supramolecular structures...
  • SNOC

  • Referenced in 0 articles [sw41045]
  • galaxy to the observer at Earth. The distances to the sources are calculated from user ... universe, allowing for arbitrary forms of “dark energy”. The code takes into account gravitational interactions ... compute standard cosmological quantities like luminosity distance, lookback time and age of the universe...
  • RNAspa

  • Referenced in 2 articles [sw17131]
  • list of several hundred suboptimal minimal free energy (MFE) predictions, as provided by the RNAsubopt ... very rapidly by a simple string Edit-Distance algorithm with a minimal loss of accuracy...
  • H2SOLV

  • Referenced in 1 article [sw22223]
  • efficient computation of the nonrelativistic energy levels and the wave functions of diatomic two-electron ... electron integrals for arbitrary values of internuclear distances developed by one of us [the first ... benchmark results obtained with H2SOLV, including the energy value accurate to 18 decimal digits...
  • afmToolkit

  • Referenced in 0 articles [sw19520]
  • analyzing Atomic Force Microscope (AFM) force-distance curves. It allows to obtain the contact ... stress-relaxation / creep experiment, obtain adhesion energies. These operations can be done either over...
  • BoomerAMG

  • Referenced in 196 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • CGAL

  • Referenced in 394 articles [sw00118]
  • The goal of the CGAL Open Source Project...