• Entropy-SGD

  • Referenced in 21 articles [sw41231]
  • smoother energy landscape and show improved generalization over SGD using uniform stability, under certain assumptions...
  • JOREK

  • Referenced in 9 articles [sw13477]
  • Energy conservation and numerical stability for the reduced MHD models of the non-linear JOREK ... conservation with respect to the full MHD energy. For the second part of this work...
  • GLOPEQ

  • Referenced in 15 articles [sw07709]
  • minimization of the Gibbs free energy, denoted (G), and (ii) the minimization of the tangent ... plane distance function, or the tangent plane stability criterion, denoted (S). For all these activity ... which can then be verified for thermodynamic stability by solving (S). Two key features ... than the minimization of the Gibbs free energy. Results for several examples are presented...
  • FoldX

  • Referenced in 9 articles [sw21771]
  • effect of mutations on the stability, folding and dynamics of proteins and nucleic acids ... FoldX, namely the calculation of the free energy of a macromolecule based on its high ... current release allows the calculation of the stability of a protein, calculation of the positions ... sites and the analysis of the free energy of complex formation. Alanine scanning, the systematic...
  • NNDB

  • Referenced in 10 articles [sw23805]
  • sets for predicting nucleic acid secondary structure stabilities. For each set of parameters, the database ... covers parameters for predicting RNA folding free energy and enthalpy changes...
  • WILMAR

  • Referenced in 3 articles [sw01020]
  • investigation of the issue of system stability, i.e. the wind integration aspects connected ... scale integration of renewable energy generation and with expected potential stability problems. Secondly the wind...
  • IUPred

  • Referenced in 7 articles [sw16915]
  • estimating their total pairwise interresidue interaction energy, based on the assumption that IUP sequences ... their inability to form sufficient stabilizing interresidue interactions. Optional to the prediction are built...
  • LITS.jl

  • Referenced in 2 articles [sw36525]
  • generation (CIG) from renewable energy sources poses challenges to the stability and transient behavior...
  • PowerDynamics.jl

  • Referenced in 3 articles [sw36524]
  • stability analysis of systems with high shares of renewable energies. It makes use of Julia...
  • BETAS

  • Referenced in 1 article [sw41171]
  • three-dimensional magnetohydrodynamic equilibrium and nonlinear stability calculations. A fully three-dimensional spectral code ... variational approach, by minimizing the potential energy subject to appropriate constraints. A second minimization, with ... additional constraint, is used to examine the stability of solutions. The magnetic field representation allows ... potential energy to be computed to the eight-digit accuracy required for nonlinear stability analysis...
  • SCPPBAND

  • Referenced in 1 article [sw09339]
  • influence of electron energy spectrum details on lattice stability, and thereby predicts condition for crystal...
  • AUTO-MUTE

  • Referenced in 9 articles [sw16878]
  • based tools have been developed for predicting stability changes upon single residue substitutions in proteins ... potential, illustrating a novel integration of both energy-based and machine learning approaches. The servers...
  • MODENA

  • Referenced in 5 articles [sw23804]
  • space of 2 objective functions, a structure stability score and structure similarity score. MODENA ... sequences at 1 run, whose lowest free energies range from a very stable value...
  • L2Roe

  • Referenced in 15 articles [sw18355]
  • presented. It reduces the dissipation of kinetic energy at the highest resolved wave numbers ... reduced numerical dissipation and the accuracy or stability of the scheme...
  • SIMONE

  • Referenced in 10 articles [sw17978]
  • designers; Operation planners; Gas dispatchers; Marketing analysts; Energy accountants; Trainees in operation. SIMONE manages pipeline ... allowing excellent computational speed, accuracy and numerical stability...
  • DL_MONTE

  • Referenced in 4 articles [sw37767]
  • apply umbrella sampling to calculate the free energy profile associated with the translocation ... employ LSMC to examine the thermodynamic stability of two plastic crystal phases of water...
  • WHFast

  • Referenced in 2 articles [sw34178]
  • systems. WHFast is significantly faster and conserves energy better than all other Wisdom-Holman integrators ... improving the Kepler-solver and ensuring numerical stability of coordinate transformations to and from Jacobi ... remove the linear secular trend in the energy error that is present in other implementations...
  • CUPSAT

  • Referenced in 3 articles [sw16877]
  • tool to analyse and predict protein stability changes upon point mutations (single amino acid mutations ... predict ΔΔG, the difference in free energy of unfolding between wild-type and mutant proteins ... comprehensive information about changes in protein stability for 19 possible substitutions of a specific amino...
  • RNAexinv

  • Referenced in 2 articles [sw17114]
  • also exhibit favorable attributes such as thermodynamic stability and mutational robustness. RNAexinv considers not only ... mutational robustness and the minimum free energy. The sequences that are generated may not fully ... into consideration the recommended values of thermodynamic stability and mutational robustness that are provided...
  • PEST1

  • Referenced in 1 article [sw09201]
  • Pest1 code determines the stability of a given equilibrium using the delta-W method ... uses the correct kinetic energy and can determine the complete spectrum. In practice we seek...