• minet

  • Referenced in 7 articles [sw08432]
  • transcriptional) gene-to-gene interaction. Four different entropy estimators are made available in the package ... Grassberger and shrink) as well as four different inference methods, namely relevance networks, ARACNE...
  • MuTE

  • Referenced in 6 articles [sw19722]
  • novel estimators of the multivariate transfer entropy. A challenge for physiologists and neuroscientists ... systems that they study at different scales, in order to derive important knowledge on structure ... data and their interactions. Transfer entropy has emerged as a powerful tool to quantify directed ... this paper we compare different approaches to evaluate transfer entropy, some of them already proposed...
  • ITE

  • Referenced in 5 articles [sw12811]
  • capable of estimating many different variants of entropy, mutual information, divergence, association measures, cross quantities...
  • COOLCAT

  • Referenced in 29 articles [sw37383]
  • entropy: clusters of similar poi lower entropy than those of dissimilar ones. We use this ... clustering results are very stable for different sample sizes and parameter settings. Also, the criteria ... rooted on the well-known notion of entropy. Most importantly, COOLCAT is well equipped...
  • RankAggreg

  • Referenced in 7 articles [sw07957]
  • ranks using several different algorithms: Borda count, Cross-Entropy Monte Carlo algorithm, Genetic algorithm...
  • AL2CO

  • Referenced in 3 articles [sw35905]
  • using two different strategies. Three conceptually different approaches (entropy-based, variance-based and matrix score ... alignments from SMART database we demonstrate that different methods result in highly correlated (correlation coefficient...
  • NRGTEN

  • Referenced in 1 article [sw36446]
  • Python toolkit that implements four different NMA models in addition to popular and novel metrics ... stability (via changes in vibrational entropy differences), on the transition probability between different conformational states...
  • TRIOPT

  • Referenced in 6 articles [sw02486]
  • aggregate entropy is calculated. Based on this entropy, partitions that hold a promise of containing ... global optimum are re-partitioned according to different triangular splitting strategies, forming new partitions. These ... calculation of transformed values. Hence, revised entropies change the direction of the search...
  • FonaDyn

  • Referenced in 1 article [sw26241]
  • components, and their sample entropy. The prevalence and stability of different EGG waveshapes are mapped...
  • TransferEntropy

  • Referenced in 0 articles [sw15134]
  • provided. The first calculates transfer entropy as the difference of mutual information. Mutual information ... references). The second estimation method estimate transfer entropy via the a generalized correlation...
  • estweight

  • Referenced in 1 article [sw38235]
  • subjects and compare different approaches (logistic regression, covariate balancing propensity score, entropy balancing, and random...
  • DINAMelt

  • Referenced in 12 articles [sw36131]
  • strand concentrations be equal. Competition among different molecular species is automatically taken into account. Calculations ... fractions together with the free energy, enthalpy, entropy and heat capacity of the ensemble. Ultraviolet...
  • RTextTools

  • Referenced in 3 articles [sw21193]
  • allowing experienced users to easily experiment with different settings and algorithm combinations. The package includes ... forests, glmnet, decision trees, neural networks, maximum entropy), comprehensive analytics, and thorough documentation...
  • DIVERSI

  • Referenced in 1 article [sw33947]
  • diversity differences, index sensitivity and fit some abundance models to actual data. Quadratic entropy...
  • Guimoo

  • Referenced in 1 article [sw04157]
  • performance evaluation (S-metric, R-metrics, contribution, entropy, generational distance, spacing, size of the dominated ... space, coverage of two sets and coverage difference...
  • EnvironmentalWaveletTool

  • Referenced in 1 article [sw20091]
  • period examination of the time series at different period bands. Moreover, statistic methods to examine ... signals have been included. Finally, the entropy of curves and splines based methods have also...
  • KReator

  • Referenced in 3 articles [sw06946]
  • interface for representing, reasoning and learning with different relational probabilistic approaches. It is a general ... programs, Markov logic networks and relational maximum entropy under grounding semantics. More approaches will...
  • SBLI

  • Referenced in 1 article [sw28513]
  • high-order discretisation with shock capturing. An entropy splitting approach is used for the Euler ... carried out using a fourth-order central-difference scheme. Time integration is performed using compact...
  • COVAIN

  • Referenced in 1 article [sw10556]
  • algorithms, such as Granger causality and permutation entropy analysis that are not implemented in other ... reconstruct a differential Jacobian matrix of two different metabolic conditions. The algorithm is based...
  • OptiSens

  • Referenced in 1 article [sw36576]
  • guided-waves. This software formulates a convex entropy-based objective function, which aims at minimizing ... platform is specialized for two types of different materials, namely isotropic and composite (anisotropic) materials...