
Surveillance
 Referenced in 28 articles
[sw00932]
 SpatioTemporal Modeling and Monitoring of Epidemic Phenomena: The intention of the Rpackage surveillance ... spatiotemporal visualization, modelling and monitoring of epidemic phenomena. This includes count, binary and categorical...

epinet
 Referenced in 13 articles
[sw24733]
 networks. Performs Bayesian inference on network and epidemic parameters, given epidemic data...

BeCoDiS
 Referenced in 10 articles
[sw15918]
 ebola virus disease epidemic. Ebola virus disease is a lethal human and primate disease that ... numerical experiments regarding the 20142015 Ebola epidemic. The first one studies the ability ... consists of forecasting the evolution of the epidemic by using some recent data. The results...

Autograph
 Referenced in 16 articles
[sw23929]
 intervention must occur early in an epidemic to halt a worm’s spread. Autograph...

FluTE
 Referenced in 8 articles
[sw31627]
 FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model. Mathematical and computer models of epidemics ... help prepare for future influenza seasonal epidemics or pandemics, we developed a new stochastic model ... used to study the dynamics of influenza epidemics in the United States and simulate...

epiABC
 Referenced in 9 articles
[sw23334]
 tutorial introduction to Bayesian inference for stochastic epidemic models using approximate Bayesian computation. Likelihoodbased ... such data by fitting to them stochastic epidemic models without having to calculate the likelihood...

EpiModel
 Referenced in 7 articles
[sw16142]
 simulating mathematical models of infectious disease. Epidemic model classes include deterministic compartmental models, stochastic agent ... software packages in R. Standard templates for epidemic modeling include SI, SIR, and SIS disease...

FRED
 Referenced in 5 articles
[sw23562]
 FRED (A Framework for Reconstructing Epidemic Dynamics): an opensource software system for modeling infectious ... levels. Results: FRED (a Framework for Reconstructing Epidemic Dynamics) is a freely available opensource ... household, school, and workplace social networks. FRED epidemic models are currently available for every state ... explore the effects of possible influenza epidemics in specific geographic regions of interest...

UNAIDS
 Referenced in 4 articles
[sw08197]
 package to estimate and project national HIV epidemics. This paper describes the Estimation and Projection ... prevalence levels in countries with generalised epidemics. The paper gives an overall summary ... process of defining and modelling a national epidemic in terms of locally relevant subepidemics ... produce the prevalence trends in the epidemic. It also provides an example of using...

gleamviz
 Referenced in 7 articles
[sw23561]
 publicly available software to explore realistic epidemic spreading scenarios at the global scale. The GLEAM...

EoN
 Referenced in 4 articles
[sw31396]
 Epidemics on Networks) is a Python module that provides tools to study the spread ... based on the book ”Mathematics of Epidemics on Networks: from Exact to Approximate Models ... models; tools for visualizing and animating simulated epidemics. Numerical solvers for ODE models; pair approximation...

PALOMA
 Referenced in 6 articles
[sw20778]
 language to model a flu epidemic under various quarantine regimes...

R0
 Referenced in 3 articles
[sw23473]
 toolbox to estimate reproduction numbers for epidemic outbreaks. BACKGROUND: Several generic methods have been proposed ... carried out. Most methods used the epidemic curve and the generation time distribution. Two categories ... reproduction number and generation interval distribution from epidemic curves...

EpiILMCT
 Referenced in 3 articles
[sw31969]
 NetworkBased Individual Level Models for Epidemics. Provides tools for simulating from continuoustime individual ... data analyses with the same models. The epidemic models considered are distancebased and/or contact ... implemented continuoustime individual level models for epidemics is given by Almutiry and Deardon...

SSF.App.Worm
 Referenced in 3 articles
[sw32876]
 worm in a network using a macroscopic epidemic model. This package models the spread ... worm in a network using a macroscopic epidemic model. Since the epidemic may encompass hundreds...

RladyBug
 Referenced in 5 articles
[sw00810]
 analysis of Infectious Diseases using Stochastic Epidemic Models. The package consists of two independent tools...

amei
 Referenced in 3 articles
[sw21015]
 total expected cost of an emerging epidemic while simultaneously propagating uncertainty regarding underlying disease parameters ... reflect the anticipated trajectory of the epidemic given the current population state and updated parameter...

EpiEstim
 Referenced in 3 articles
[sw24060]
 estimate time varying reproduction numbers from epidemic curves. This package provides tools to quantify transmissibility ... throughout an epidemic from the analysis of time series of incidence...

EpiILM
 Referenced in 3 articles
[sw31968]
 Network Based Individual Level Models for Epidemics. Provides tools for simulating from discretetime individual ... models for infectious disease data analysis. This epidemic model class contains spatial and contactnetwork...

Epigrass
 Referenced in 4 articles
[sw05675]
 EpiGrass is a simulator of epidemics over networks. It is a scientific tool created...