• Surveillance

  • Referenced in 33 articles [sw00932]
  • Spatio-Temporal Modeling and Monitoring of Epidemic Phenomena: The intention of the R-package surveillance ... spatio-temporal visualization, modelling and monitoring of epidemic phenomena. This includes count, binary and categorical...
  • Be-CoDiS

  • Referenced in 15 articles [sw15918]
  • ebola virus disease epidemic. Ebola virus disease is a lethal human and primate disease that ... numerical experiments regarding the 2014-2015 Ebola epidemic. The first one studies the ability ... consists of forecasting the evolution of the epidemic by using some recent data. The results...
  • EpiEstim

  • Referenced in 16 articles [sw24060]
  • estimate time varying reproduction numbers from epidemic curves. This package provides tools to quantify transmissibility ... throughout an epidemic from the analysis of time series of incidence...
  • epinet

  • Referenced in 14 articles [sw24733]
  • networks. Performs Bayesian inference on network and epidemic parameters, given epidemic data...
  • FluTE

  • Referenced in 10 articles [sw31627]
  • FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model. Mathematical and computer models of epidemics ... help prepare for future influenza seasonal epidemics or pandemics, we developed a new stochastic model ... used to study the dynamics of influenza epidemics in the United States and simulate...
  • Autograph

  • Referenced in 16 articles [sw23929]
  • intervention must occur early in an epidemic to halt a worm’s spread. Autograph...
  • epiABC

  • Referenced in 10 articles [sw23334]
  • tutorial introduction to Bayesian inference for stochastic epidemic models using approximate Bayesian computation. Likelihood-based ... such data by fitting to them stochastic epidemic models without having to calculate the likelihood...
  • EpiModel

  • Referenced in 9 articles [sw16142]
  • simulating mathematical models of infectious disease. Epidemic model classes include deterministic compartmental models, stochastic agent ... software packages in R. Standard templates for epidemic modeling include SI, SIR, and SIS disease...
  • FRED

  • Referenced in 7 articles [sw23562]
  • FRED (A Framework for Reconstructing Epidemic Dynamics): an open-source software system for modeling infectious ... levels. Results: FRED (a Framework for Reconstructing Epidemic Dynamics) is a freely available open-source ... household, school, and workplace social networks. FRED epidemic models are currently available for every state ... explore the effects of possible influenza epidemics in specific geographic regions of interest...
  • R0

  • Referenced in 6 articles [sw23473]
  • toolbox to estimate reproduction numbers for epidemic outbreaks. BACKGROUND: Several generic methods have been proposed ... carried out. Most methods used the epidemic curve and the generation time distribution. Two categories ... reproduction number and generation interval distribution from epidemic curves...
  • EoN

  • Referenced in 6 articles [sw31396]
  • Epidemics on Networks) is a Python module that provides tools to study the spread ... based on the book ”Mathematics of Epidemics on Networks: from Exact to Approximate Models ... models; tools for visualizing and animating simulated epidemics. Numerical solvers for ODE models; pair approximation...
  • UNAIDS

  • Referenced in 4 articles [sw08197]
  • package to estimate and project national HIV epidemics. This paper describes the Estimation and Projection ... prevalence levels in countries with generalised epidemics. The paper gives an overall summary ... process of defining and modelling a national epidemic in terms of locally relevant sub-epidemics ... produce the prevalence trends in the epidemic. It also provides an example of using...
  • COVID-ABS

  • Referenced in 5 articles [sw41716]
  • agent-based model of COVID-19 epidemic to simulate health and economic effects of social ... plan their actions against the COVID-19 epidemic...
  • gleamviz

  • Referenced in 7 articles [sw23561]
  • publicly available software to explore realistic epidemic spreading scenarios at the global scale. The GLEAM...
  • epimdr

  • Referenced in 4 articles [sw31580]
  • package epimdr: Functions and Data for ”Epidemics: Models and Data in R”. Functions, data sets ... shiny apps for ”Epidemics: Models and Data in R” by Ottar N. Bjornstad (ISBN ... advanced quantitative companion to the coursera Epidemics Massive Online Open Course ....
  • PALOMA

  • Referenced in 6 articles [sw20778]
  • language to model a flu epidemic under various quarantine regimes...
  • EpiILMCT

  • Referenced in 3 articles [sw31969]
  • Network-Based Individual Level Models for Epidemics. Provides tools for simulating from continuous-time individual ... data analyses with the same models. The epidemic models considered are distance-based and/or contact ... implemented continuous-time individual level models for epidemics is given by Almutiry and Deardon...
  • SSF.App.Worm

  • Referenced in 3 articles [sw32876]
  • worm in a network using a macroscopic epidemic model. This package models the spread ... worm in a network using a macroscopic epidemic model. Since the epidemic may encompass hundreds...
  • RladyBug

  • Referenced in 5 articles [sw00810]
  • analysis of Infectious Diseases using Stochastic Epidemic Models. The package consists of two independent tools...
  • GEMFsim

  • Referenced in 3 articles [sw14677]
  • GEMFsim: A Stochastic Simulator for the Generalized Epidemic Modeling Framework. The recently proposed generalized epidemic...