
Surveillance
 Referenced in 35 articles
[sw00932]
 SpatioTemporal Modeling and Monitoring of Epidemic Phenomena: The intention of the Rpackage surveillance ... spatiotemporal visualization, modelling and monitoring of epidemic phenomena. This includes count, binary and categorical...

BeCoDiS
 Referenced in 20 articles
[sw15918]
 ebola virus disease epidemic. Ebola virus disease is a lethal human and primate disease that ... numerical experiments regarding the 20142015 Ebola epidemic. The first one studies the ability ... consists of forecasting the evolution of the epidemic by using some recent data. The results...

EpiEstim
 Referenced in 17 articles
[sw24060]
 estimate time varying reproduction numbers from epidemic curves. This package provides tools to quantify transmissibility ... throughout an epidemic from the analysis of time series of incidence...

epinet
 Referenced in 14 articles
[sw24733]
 networks. Performs Bayesian inference on network and epidemic parameters, given epidemic data...

FluTE
 Referenced in 10 articles
[sw31627]
 FluTE, a Publicly Available Stochastic Influenza Epidemic Simulation Model. Mathematical and computer models of epidemics ... help prepare for future influenza seasonal epidemics or pandemics, we developed a new stochastic model ... used to study the dynamics of influenza epidemics in the United States and simulate...

Autograph
 Referenced in 16 articles
[sw23929]
 intervention must occur early in an epidemic to halt a worm’s spread. Autograph...

EpiModel
 Referenced in 11 articles
[sw16142]
 simulating mathematical models of infectious disease. Epidemic model classes include deterministic compartmental models, stochastic agent ... software packages in R. Standard templates for epidemic modeling include SI, SIR, and SIS disease...

epiABC
 Referenced in 10 articles
[sw23334]
 tutorial introduction to Bayesian inference for stochastic epidemic models using approximate Bayesian computation. Likelihoodbased ... such data by fitting to them stochastic epidemic models without having to calculate the likelihood...

FRED
 Referenced in 7 articles
[sw23562]
 FRED (A Framework for Reconstructing Epidemic Dynamics): an opensource software system for modeling infectious ... levels. Results: FRED (a Framework for Reconstructing Epidemic Dynamics) is a freely available opensource ... household, school, and workplace social networks. FRED epidemic models are currently available for every state ... explore the effects of possible influenza epidemics in specific geographic regions of interest...

R0
 Referenced in 7 articles
[sw23473]
 toolbox to estimate reproduction numbers for epidemic outbreaks. BACKGROUND: Several generic methods have been proposed ... carried out. Most methods used the epidemic curve and the generation time distribution. Two categories ... reproduction number and generation interval distribution from epidemic curves...

COVIDABS
 Referenced in 8 articles
[sw41716]
 agentbased model of COVID19 epidemic to simulate health and economic effects of social ... plan their actions against the COVID19 epidemic...

EoN
 Referenced in 6 articles
[sw31396]
 Epidemics on Networks) is a Python module that provides tools to study the spread ... based on the book ”Mathematics of Epidemics on Networks: from Exact to Approximate Models ... models; tools for visualizing and animating simulated epidemics. Numerical solvers for ODE models; pair approximation...

UNAIDS
 Referenced in 4 articles
[sw08197]
 package to estimate and project national HIV epidemics. This paper describes the Estimation and Projection ... prevalence levels in countries with generalised epidemics. The paper gives an overall summary ... process of defining and modelling a national epidemic in terms of locally relevant subepidemics ... produce the prevalence trends in the epidemic. It also provides an example of using...

gleamviz
 Referenced in 7 articles
[sw23561]
 publicly available software to explore realistic epidemic spreading scenarios at the global scale. The GLEAM...

epimdr
 Referenced in 4 articles
[sw31580]
 package epimdr: Functions and Data for ”Epidemics: Models and Data in R”. Functions, data sets ... shiny apps for ”Epidemics: Models and Data in R” by Ottar N. Bjornstad (ISBN ... advanced quantitative companion to the coursera Epidemics Massive Online Open Course ....

RladyBug
 Referenced in 6 articles
[sw00810]
 analysis of Infectious Diseases using Stochastic Epidemic Models. The package consists of two independent tools...

PALOMA
 Referenced in 6 articles
[sw20778]
 language to model a flu epidemic under various quarantine regimes...

amei
 Referenced in 4 articles
[sw21015]
 total expected cost of an emerging epidemic while simultaneously propagating uncertainty regarding underlying disease parameters ... reflect the anticipated trajectory of the epidemic given the current population state and updated parameter...

EpiILMCT
 Referenced in 3 articles
[sw31969]
 NetworkBased Individual Level Models for Epidemics. Provides tools for simulating from continuoustime individual ... data analyses with the same models. The epidemic models considered are distancebased and/or contact ... implemented continuoustime individual level models for epidemics is given by Almutiry and Deardon...

SSF.App.Worm
 Referenced in 3 articles
[sw32876]
 worm in a network using a macroscopic epidemic model. This package models the spread ... worm in a network using a macroscopic epidemic model. Since the epidemic may encompass hundreds...