• ModHMM

  • Referenced in 1 article [sw29057]
  • valuable alternative to study the epigenetic and regulatory landscape across and within cell types...
  • Expokit

  • Referenced in 200 articles [sw00258]
  • Expokit provides a set of routines aimed at...
  • R

  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...
  • Graphviz

  • Referenced in 90 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...
  • Bioconductor

  • Referenced in 319 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • ARPACK

  • Referenced in 842 articles [sw04218]
  • ARPACK is a collection of Fortran77 subroutines designed...
  • gplots

  • Referenced in 7 articles [sw04555]
  • gplots: Various R Programming Tools for Plotting Data...
  • PLINK

  • Referenced in 66 articles [sw04581]
  • PLINK is a free, open-source whole genome...
  • DLMF

  • Referenced in 2809 articles [sw04968]
  • NIST digital library of mathematical functions. The National...
  • gcrma

  • Referenced in 97 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...
  • edgeR

  • Referenced in 53 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • igraph

  • Referenced in 209 articles [sw07066]
  • igraph is a software package for complex network...
  • WGCNA

  • Referenced in 26 articles [sw07123]
  • R package WGCNA: Weighted Correlation Network Analysis. Functions...
  • BoolNet

  • Referenced in 18 articles [sw07365]
  • BoolNet: Generation, reconstruction, simulation and analysis of synchronous...
  • Cytoscape

  • Referenced in 80 articles [sw09080]
  • Cytoscape: A Software Environment for Integrated Models of...
  • Sylamer

  • Referenced in 2 articles [sw11231]
  • Sylamer is a system for finding significantly over...
  • COPASI

  • Referenced in 70 articles [sw12253]
  • COPASI: biochemical network simulator. COPASI is a software...
  • Dynagraph

  • Referenced in 15 articles [sw13656]
  • The Dynagraph libraries are written in platform-neutral...
  • BioNet

  • Referenced in 5 articles [sw13828]
  • The BioNet package provides an extensive framework for...
  • KEGG

  • Referenced in 280 articles [sw13866]
  • KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...