• ModHMM

• Referenced in 1 article [sw29057]
• valuable alternative to study the epigenetic and regulatory landscape across and within cell types...

• Expokit

• Referenced in 200 articles [sw00258]
• Expokit provides a set of routines aimed at...

• R

• Referenced in 9969 articles [sw00771]
• R is a language and environment for statistical...

• Graphviz

• Referenced in 90 articles [sw01283]
• Graphviz is open source graph visualization software. Graph...

• Bioconductor

• Referenced in 319 articles [sw04205]
• Bioconductor provides tools for the analysis and comprehension...

• ARPACK

• Referenced in 842 articles [sw04218]
• ARPACK is a collection of Fortran77 subroutines designed...

• gplots

• Referenced in 7 articles [sw04555]
• gplots: Various R Programming Tools for Plotting Data...

• PLINK

• Referenced in 66 articles [sw04581]
• PLINK is a free, open-source whole genome...

• DLMF

• Referenced in 2809 articles [sw04968]
• NIST digital library of mathematical functions. The National...

• gcrma

• Referenced in 97 articles [sw06104]
• Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...

• edgeR

• Referenced in 53 articles [sw06936]
• edgeR: a Bioconductor package for differential expression analysis...

• igraph

• Referenced in 209 articles [sw07066]
• igraph is a software package for complex network...

• WGCNA

• Referenced in 26 articles [sw07123]
• R package WGCNA: Weighted Correlation Network Analysis. Functions...

• BoolNet

• Referenced in 18 articles [sw07365]
• BoolNet: Generation, reconstruction, simulation and analysis of synchronous...

• Cytoscape

• Referenced in 80 articles [sw09080]
• Cytoscape: A Software Environment for Integrated Models of...

• Sylamer

• Referenced in 2 articles [sw11231]
• Sylamer is a system for finding significantly over...

• COPASI

• Referenced in 70 articles [sw12253]
• COPASI: biochemical network simulator. COPASI is a software...

• Dynagraph

• Referenced in 15 articles [sw13656]
• The Dynagraph libraries are written in platform-neutral...

• BioNet

• Referenced in 5 articles [sw13828]
• The BioNet package provides an extensive framework for...

• KEGG

• Referenced in 280 articles [sw13866]
• KEGG: Kyoto Encyclopedia of Genes and Genomes. KEGG...