• Meta-i6mA

  • Referenced in 1 article [sw37446]
  • framework. DNA N6-methyladenine (6mA) represents important epigenetic modifications, which are responsible for various cellular...
  • MAnorm

  • Referenced in 1 article [sw38449]
  • sets describing transcription factor binding sites and epigenetic modifications. The quantitative binding differences inferred...
  • XGR

  • Referenced in 0 articles [sw15613]
  • functional genomic annotations (such as open chromatin, epigenetic marks and TF binding sites) and using...
  • missMethyl

  • Referenced in 0 articles [sw18922]
  • most commonly studied epigenetic modifications due to its role in both disease and development...
  • ellenGP

  • Referenced in 0 articles [sw29486]
  • regression and multi-class classification that incorporates epigenetic learning and uses a stack-based, linear...
  • Expokit

  • Referenced in 184 articles [sw00258]
  • Expokit provides a set of routines aimed at...
  • R

  • Referenced in 8836 articles [sw00771]
  • R is a language and environment for statistical...
  • Graphviz

  • Referenced in 88 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...
  • NEURON

  • Referenced in 181 articles [sw03059]
  • Parallel network simulations with NEURON. The NEURON simulation...
  • Bioconductor

  • Referenced in 308 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • ARPACK

  • Referenced in 806 articles [sw04218]
  • ARPACK is a collection of Fortran77 subroutines designed...
  • gplots

  • Referenced in 7 articles [sw04555]
  • gplots: Various R Programming Tools for Plotting Data...
  • GLPK

  • Referenced in 173 articles [sw04560]
  • The GLPK (GNU Linear Programming Kit) package is...
  • PLINK

  • Referenced in 64 articles [sw04581]
  • PLINK is a free, open-source whole genome...
  • Rfam

  • Referenced in 33 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • Rnamotif

  • Referenced in 10 articles [sw04638]
  • The rnamotif program [1] searches a database for...
  • LIBSVM

  • Referenced in 1124 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • pcalg

  • Referenced in 85 articles [sw06072]
  • R package pcalg: Estimation of CPDAG/PAG and causal...
  • gcrma

  • Referenced in 96 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...
  • WEKA

  • Referenced in 292 articles [sw06435]
  • WEKA: Waikato Environment for Knowledge Analysis. WEKA is...