• KEEL

  • Referenced in 103 articles [sw06791]
  • KEEL: a software tool to assess evolutionary algorithms for data mining problems. This paper introduces ... KEEL which is a software tool to assess evolutionary algorithms for Data Mining problems ... well as the integration of evolutionary learning techniques with different pre-processing techniques, allowing ... learning model in comparison to existing software tools. Moreover, KEEL has been designed with...
  • PhyloNet

  • Referenced in 9 articles [sw20725]
  • relationships. Various software tools have been recently developed to analyze reticulate evolutionary relationships, which include ... which is a suite of tools for analyzing reticulate evolutionary relationships, or evolutionary networks, which ... taxa. These tools can be classified into four categories: (1) evolutionary network representation: reading/writing evolutionary ... allows for efficient interoperability of evolutionary network software tools. Currently, all utilities in PhyloNet...
  • MEGA

  • Referenced in 34 articles [sw09078]
  • evolutionary relationships and patterns of DNA and protein evolution. In addition to the tools ... based repositories, and it includes tools for visual presentation of the results obtained ... form of interactive phylogenetic trees and evolutionary distance matrices. Here we discuss the motivation, design...
  • PARAMESH

  • Referenced in 100 articles [sw00677]
  • operate as a domain decomposition tool for users who want to parallelize their serial codes ... package can provide them with an incremental evolutionary path for their code, converting it first...
  • PhyloNetwork

  • Referenced in 27 articles [sw28216]
  • PhyloNetwork: A perl package and an alignment tool for phylogenetic networks. Phylogenetic networks ... trees that allow for the representation of evolutionary events acting at the population level, like ... lateral gene transfer. While most phylogenetics tools implement a wide range of algorithms on phylogenetic...
  • ape

  • Referenced in 55 articles [sw04569]
  • reading and writing nucleotide sequences, and several tools such as Mantel’s test, minimum spanning ... data (alex, trex, kronoviz), estimation of absolute evolutionary rates and clock-like trees using mean...
  • MOEAT

  • Referenced in 3 articles [sw09211]
  • tool for multiobjective evolutionary algorithms. This paper introduces a software tool based on illustrative applications ... multiobjective evolutionary algorithms. The multiobjective evolutionary algorithms tool (MOEAT) written in C# using a variety...
  • MOPED

  • Referenced in 12 articles [sw02388]
  • evolutionary multi-objective optimization tool based on an estimation of distribution algorithm is proposed...
  • TreeJuxtaposer

  • Referenced in 5 articles [sw18623]
  • details of many phylogenetic, or evolutionary, trees. Our tool is also useful in many other...
  • METCO

  • Referenced in 6 articles [sw19036]
  • incorporate their own problems and evolutionary algorithms, and facilitates tool maintenance. A wide variety ... cooperation of a set of evolutionary algorithms. The aim of the new model...
  • EDDIE

  • Referenced in 13 articles [sw04191]
  • stands for Evolutionary Dynamic Data Investment Evaluator. It is a genetic programming tool designed...
  • mvMORPH

  • Referenced in 4 articles [sw20088]
  • package mvMORPH: Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data. Fits multivariate (Brownian...
  • adephylo

  • Referenced in 3 articles [sw08303]
  • adephylo: new tools for investigating the phylogenetic signal in biological traits. adephylo is a package ... software dedicated to the analysis of comparative evolutionary data. Phylogenetic comparative methods initially aimed ... interesting evolutionary patterns. For this purpose, we developed the package adephylo that provides tools ... structures. These tools open up new perspectives in the analysis of evolutionary comparative data...
  • ForSim

  • Referenced in 2 articles [sw35346]
  • ForSim: a tool for exploring the genetic architecture of complex traits with controlled truth. Many ... areas. ForSim is a flexible forward evolutionary simulation tool for exploring the consequences of evolution...
  • rWind

  • Referenced in 2 articles [sw31313]
  • Currents Data in Ecological and Evolutionary Analysis. Tools for download and manage surface wind...
  • PAUP*

  • Referenced in 53 articles [sw07834]
  • used software package for the inference of evolutionary trees. In addition, the PAUP manual ... make PAUP* 4.0 an even more indispensable tool in comparative biological analysis than were previous...
  • CoreASM

  • Referenced in 14 articles [sw01936]
  • emphasizes freedom of experimentation and supports the evolutionary nature of design as a product ... CoreASM engine, the heart of the CoreASM tool suite, is based on an extensible architecture...
  • rVISTA

  • Referenced in 4 articles [sw18501]
  • species. Using this evolutionary principle, we have created a comparative tool, rVISTA, for analyzing...
  • Notung

  • Referenced in 12 articles [sw08917]
  • yeast, and vertebrate genomes. The use of evolutionary trees to analyze the history of gene ... estimate duplication times provides a powerful tool for studying this process. Many studies...
  • Rapide

  • Referenced in 38 articles [sw01249]
  • toolset supporting the use of EADLs in evolutionary development and rigorous analysis of large-scale ... date for constructing early life cycle prototyping tools, and later life cycle tools for correctness...