
safeBinaryRegression
 Referenced in 2 articles
[sw25522]
 test for the existence of the maximum likelihood estimate is included in the fitting procedure...

ppmlhdfe
 Referenced in 1 article
[sw37489]
 techniques we introduce for accelerating HDFEIRLS estimation specifically. ppmlhdfe also implements a novel ... check for the existence of (pseudo) maximum likelihood estimates...

MLEP
 Referenced in 1 article
[sw32422]
 intuition or as estimated by the maximum likelihood principle. Several methods exist by which...

latentnet
 Referenced in 18 articles
[sw10550]
 modeling networks based on positing the existence of an latent space of characteristics ... Carlo algorithm. It can also compute maximum likelihood estimates for the latent position model...

pmlr
 Referenced in 1 article
[sw21117]
 prior, and yields penalized maximum likelihood estimates (PLEs) that always exist. Hypothesis testing is conducted...

Medlda
 Referenced in 11 articles
[sw11723]
 data. However, existing supervised topic models predominantly employ likelihooddriven objective functions for learning ... corpus. In this paper, we propose the maximum entropy discrimination latent Dirichlet allocation (MedLDA) model ... applied for jointly maxmargin and maximum likelihood learning of directed or undirected topic models ... variational methods for posterior inference and parameter estimation are derived and extensive empirical studies...

PoMo
 Referenced in 7 articles
[sw35039]
 estimation. Here, we present a simple maximum likelihood approach that accounts for ancestral variation ... that we have recently shown to efficiently estimate mutation rates and fixation biases from within ... extend this model to perform efficient estimation of species trees. We test the performance ... sorting using simulations and compare it with existing methods both in accuracy and computational speed...

Rate4Site
 Referenced in 7 articles
[sw35756]
 proteins of known threedimensional (3D) structure exist, with yet unknown function. In light ... Rate4Site estimates the rate of evolution of amino acid sites using the maximum likelihood...

MEGA4
 Referenced in 7 articles
[sw07695]
 MEGA software, which expands on the existing facilities for editing DNA sequence data from autosequencers ... manual sequence alignment, analyzing sequence alignments to estimate evolutionary distances, inferring phylogenetic trees, and testing ... generated. Another new feature is the Maximum Composite Likelihood (MCL) method for estimating evolutionary distances...

COMODE
 Referenced in 3 articles
[sw36145]
 model are estimated by maximum likelihood using a nonlinear constraint optimization method. Likelihoodbased cross ... performance of COMODE is compared with existing motif detection methods on simulated data that incorporate...

CodonTest
 Referenced in 1 article
[sw37906]
 frequencies and branch lengths are estimated using standard maximum likelihood optimization procedures. We apply ... alignments and show improved model fit over existing models of codon evolution. Our results suggest...

BEAGLE
 Referenced in 4 articles
[sw12586]
 approaches such as Bayesian inference and maximum likelihood estimation. Yet, for large data sets ... specialized library for phylogenetic calculation would allow existing software packages to make more effective...

RelateAdmix
 Referenced in 1 article
[sw23503]
 research fields. However, currently only few estimators exist for individuals that are admixed, i.e. have ... from more than one population, and these estimators fail in some situations. RESULTS: We present ... software tool, RelateAdmix, for obtaining maximum likelihood estimates of pairwise relatedness from genetic data between...

roc
 Referenced in 2 articles
[sw37359]
 Parametric maximum likelihood methods for fitting of the ROC curve provide direct estimates ... provide estimates of the area under the ROC curve, but do not directly estimate ... curve are com monly used, although ambiguity exists about their behavior under diverse study conditions...

SemRegex
 Referenced in 1 article
[sw36206]
 model using a syntaxbased objective: maximum likelihood estimation (MLE). Such syntaxbased approaches ... expressions from natural language. Different from the existing syntaxbased approaches, SemRegex trains the model...

AprilCal
 Referenced in 1 article
[sw37886]
 parameters in the camera model. Existing toolboxes ask users to capture images of a calibration ... their choosing, after which the maximumlikelihood calibration is computed using all images ... computes the stability of the focal length estimates for initializing the calibration, and another that...

GWSEM
 Referenced in 1 article
[sw37731]
 using a Diagonally Weighted Least Squares (DWLS) estimator for four common SEMs: a onefactor ... with the more traditional Full Information Maximum Likelihood parameters and pvalues. We also present ... power analyses and a comparison with and existing multivariate GWAS software package...

pyMEF
 Referenced in 2 articles
[sw07455]
 include Dirichlet process mixtures and $k$maximum likelihood estimators. Most of the methods, including expectation ... compute. On the other hand, kernel density estimation yields large models which are computationally cheap ... simplification of the kernel density estimator. The simplification is a clustering method based ... exponential families. Unlike most of the other existing tools, this library allows...

DACTAL
 Referenced in 1 article
[sw29613]
 sequences are challenging for existing methods, the estimation of substantially larger phylogenies poses a problem ... phylogeny estimation that produces trees from unaligned sequence datasets without ever needing to estimate ... decomposes the taxon set into overlapping subsets, estimates trees on each subset, and then combines ... compare DACTAL to SATé and maximum likelihood trees on estimated alignments using simulated and real...

strel2
 Referenced in 0 articles
[sw37620]
 populationbased datasets. strel2 implements the maximumlikelihood estimation approach developed by Estève ... user to obtain interval and covariatespecific estimates of the quantities of interest. Although alternative ... more powerful commands for relative survival exist, strel2 is a simple tool that is particularly...