• RAPTOR

  • Referenced in 20 articles [sw09002]
  • technique. Large scale benchmark test for fold recognition shows that RAPTOR ignificantly outperforms other programs ... fold similarity level. The CAFASP3 evaluation, a blind and public test by the protein structure ... recognition capability and alignment accuracy for Fold Recognition (FR) family targets. RAPTOR also performs very...
  • PSIPRED

  • Referenced in 15 articles [sw11340]
  • GenTHREADER, a sequence profile based fold recognition method. Availability: Freely available to non-commercial users...
  • GenThreader

  • Referenced in 10 articles [sw35746]
  • Fold Recognition (GenTHREADER). GenThreader: Detect distant homology to proteins of known structure; Compare a sequence...
  • MaxSub

  • Referenced in 8 articles [sw35908]
  • test-bed extracted from the CASP3 fold-recognition models. A rough qualitative comparison...
  • PRED-CLASS

  • Referenced in 5 articles [sw26873]
  • preliminary step in fold recognition and ab initio structure prediction methods. Detailed results obtained...
  • FORESST

  • Referenced in 3 articles [sw26866]
  • FORESST: fold recognition from secondary structure predictions of proteins. MOTIVATION: A method for recognizing ... three-dimensional fold from the protein amino acid sequence based on a combination of hidden ... Beta class proteins. Compared to other fold recognition methods based on HMMs, this approach ... structure sequences of proteins having a similar fold. Secondary structure prediction is performed...
  • FoldRec-C2C

  • Referenced in 1 article [sw40054]
  • FoldRec-C2C: protein fold recognition by combining cluster-to-cluster model and protein similarity network ... studying the protein structures, protein fold recognition is playing an important role in predicting ... between two groups of proteins from 2-folds. However, the homology relationship among proteins ... FoldRec-C2C predictor, protein fold recognition problem is treated as an information retrieval task...
  • MULTICOM

  • Referenced in 2 articles [sw15827]
  • protein beta-sheet structure prediction, protein fold recognition, multiple template combination, template-based structure modeling...
  • TUNE

  • Referenced in 1 article [sw35757]
  • protein sequence - structure compatibility. Motivation: Fold recognition programs align a probe protein sequence onto protein...
  • RBSURFpred

  • Referenced in 1 article [sw35359]
  • protein structure prediction, binding region identification, fold recognition problems etc. Improving the prediction...
  • MetaDisorder

  • Referenced in 1 article [sw16901]
  • protein structures, reported by the protein fold-recognition methods, to infer the potentially structured...
  • MICAlign

  • Referenced in 2 articles [sw12010]
  • difficult problem even following the correct recognition of folds. Here we present MICAlign, a sequence...
  • GPCRpred

  • Referenced in 7 articles [sw22471]
  • accuracy of 99.5% when evaluated using 5-fold cross-validation. The method is further able ... dataset of 650 GPCRs. A server for recognition and classification of GPCRs based on multiclass...
  • AdaptiveFace

  • Referenced in 2 articles [sw37094]
  • recognition. In the past two years, face recognition has achieved remarkable improvements ... make the sampling process adaptive in two folds: Firstly, we propose the Hard Prototype Mining...
  • iTerm-PseKNC

  • Referenced in 1 article [sw40053]
  • tuple nucleotide composition (PseKNC). The 5-fold cross-validation test results showed that our proposed ... become a powerful tool for bacterial terminator recognition. Availability and implementation: For the convenience...
  • LocARNAscan

  • Referenced in 2 articles [sw23118]
  • This same problem also arises in the recognition of novel members of large classes ... thermodynamic propensity of the target sequence to fold into the correct secondary structure helpful...
  • MOTIF-EM

  • Referenced in 1 article [sw16892]
  • recent breakthrough in 2D object recognition. The technique works by constructing rotationally invariant, low-dimensional ... used MOTIF-EM to identify the conserved folds shared among dsDNA bacteriophages HK97, Epsilon...
  • GlycoMine

  • Referenced in 0 articles [sw25080]
  • cellular communication, ligand recognition and subcellular recognition. It is estimated that >50% of the entire ... type-specific prediction of glycosylation sites. Five-fold cross-validation and independent tests show that...
  • GAP

  • Referenced in 3189 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • gfun

  • Referenced in 144 articles [sw00344]
  • The gfun package provides tools for determining and...