• DDE-BIFTOOL

  • Referenced in 333 articles [sw02396]
  • steady state solutions, their Hopf and fold bifurcations, periodic solutions and connecting orbits...
  • VAMPIRE

  • Referenced in 264 articles [sw02918]
  • introduction of new predicate definitions and dynamic folding of such definitions. A number of standard...
  • CHARMM

  • Referenced in 120 articles [sw05953]
  • drug binding as well as conformational folding of peptides. It uses classical mechanical methods...
  • Mfold

  • Referenced in 42 articles [sw12672]
  • Mfold web server for nucleic acid folding and hybridization prediction. The abbreviated name, ‘mfold ... provide easy access to RNA and DNA folding and hybridization software to the scientific community ... energy dot plots’, are available for the folding of single sequences. A variety of ‘bulk...
  • VeriFast

  • Referenced in 66 articles [sw07705]
  • memory as a separation logic assertion. Folding or unfolding abstract predicate assertions is performed through...
  • Graded Ring Database

  • Referenced in 40 articles [sw11291]
  • classification of all toric canonical 3-folds, Calabi–Yau 3-fold hypersurfaces, and candidate Hilbert ... series for Fano 4- and 5-folds. It also contains combinatorial data such...
  • CONTENT

  • Referenced in 37 articles [sw01058]
  • more complex phenomena is encountered. These are fold, flip and Neimark - Sacker bifurcations; they ... points and to detect, compute and continue fold points, flip points and Neimark - Sacker points...
  • NINJA

  • Referenced in 37 articles [sw02398]
  • numerical computing, initial measurements indicated a hundred-fold performance disadvantage between Java and more established...
  • rhalton

  • Referenced in 35 articles [sw20515]
  • brings efficiency gains of several thousand fold. On other problems, the efficiency gain is minor...
  • RAPTOR

  • Referenced in 20 articles [sw09002]
  • Research technique. Large scale benchmark test for fold recognition shows that RAPTOR ignificantly outperforms other ... programs at the fold similarity level. The CAFASP3 evaluation, a blind and public test ... recognition capability and alignment accuracy for Fold Recognition (FR) family targets. RAPTOR also performs very...
  • ViennaRNA

  • Referenced in 23 articles [sw10504]
  • thermodynamic ensemble, and the suboptimal folding algorithm of (Wuchty et.al 1999) which generates all suboptimal ... design sequences with a predefined structure (inverse folding...
  • iRSpot-EL

  • Referenced in 29 articles [sw24776]
  • ensemble classifier of clustering approach. Five-fold cross tests on a widely used benchmark dataset...
  • penalized

  • Referenced in 28 articles [sw06071]
  • package penalized: Efficient approximate k-fold and leave-one-out cross-validation for ridge regression...
  • DESeq2

  • Referenced in 27 articles [sw41938]
  • Anders S (2014). “Moderated estimation of fold change and dispersion for RNA-seq data with...
  • FoldRate

  • Referenced in 15 articles [sw35301]
  • FoldRate: A Web-Server for Predicting Protein Folding Rates from Primary Sequence. With the avalanche ... method by which one can predict the folding rates of proteins based on their amino ... called FoldRate, was developed by fusing the folding-correlated features that can be either directly ... structure information for predicting the folding rate. As a user-friendly web-server, FoldRate...
  • Euk-PLoc

  • Referenced in 24 articles [sw22420]
  • success rates thus obtained via the 5-fold and jackknife cross-validation tests were...
  • GeneRank

  • Referenced in 17 articles [sw27064]
  • microarray experiments is usually based on the fold-change of gene expression between a reference ... gene based on its experimentally observed fold-change alone and may be used...
  • SAM

  • Referenced in 23 articles [sw08356]
  • additional features for fold-change thresholding and block permutations. Here, we explain...
  • Sfold

  • Referenced in 13 articles [sw23820]
  • Sfold web server for statistical folding and rational design of nucleic acids. The Sfold ... Sfold, a recently developed nucleic acid folding software package, via the World Wide ... original extension of the underlying RNA folding algorithm to account for the likely existence...