• KELLEY

  • Referenced in 643 articles [sw04829]
  • also second order derivatives of the objective function. The first part contains five chapters ... basic concepts. It also introduces a parameter identification problem and a discretized optimal control problem ... respective chapter using the parameter identification problem and the discretized optimal control problem introduced ... long, deals with the optimization of noisy functions. Such optimization problems arise, e.g., when...
  • CONTSID

  • Referenced in 37 articles [sw14945]
  • continuous-time (CT) transfer function and state-space model identification directly from regularly or irregularly ... serve the cause of direct time-domain identification of continuous-time linear models but also ... data; it provides transfer function and state-space model identification methods for single-input single...
  • kappalab

  • Referenced in 54 articles [sw06086]
  • functions can also be computed. Kappalab further contains seven capacity identification routines: three least squares ... unsupervised approach grounded on parametric entropies. The functions contained in Kappalab can for instance...
  • WGCNA

  • Referenced in 26 articles [sw07123]
  • data. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization ... traits. Also includes a number of utility functions for data manipulation and visualization...
  • FitAR

  • Referenced in 9 articles [sw08212]
  • Model Fitting. Comprehensive model building function for identification, estimation and diagnostic checking...
  • ConSurf

  • Referenced in 5 articles [sw35754]
  • ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information. Summary ... recently developed algorithmic tools for the identification of functionally important regions in proteins of known...
  • GlobPlot

  • Referenced in 7 articles [sw06213]
  • predict protein structure and function, including identification of those proteins that are partially or wholly ... binding sites) which are important for protein function. We present here a new tool...
  • Rate4Site

  • Referenced in 7 articles [sw35756]
  • Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping...
  • SPOT

  • Referenced in 6 articles [sw21276]
  • implementing a class of nonlinear system identification algorithms. It was tested with MATLAB 7.8.0 (R2009a ... dual cones, and a set of functions for identification of linear and nonlinear dynamical systems...
  • ConSeq

  • Referenced in 4 articles [sw35647]
  • ConSeq: the identification of functionally and structurally important residues in protein sequences. Motivation: ConSeq ... server for the identification of biologically important residues in protein sequences. Functionally important residues that...
  • HMQV

  • Referenced in 89 articles [sw02714]
  • that provides the same superb performance and functionality of the original protocol but for which ... challenge-response signatures”, derived from the Schnorr identification scheme, that have the property that both...
  • NestedMICA

  • Referenced in 4 articles [sw35335]
  • important step in protein functional element identification. We adapted and extended NestedMICA, an ab initio...
  • iDNA6mA-PseKNC

  • Referenced in 21 articles [sw27663]
  • Accurate identification of its sites will be very helpful for revealing the biological functions...
  • ToppGene Suite

  • Referenced in 8 articles [sw30169]
  • prioritization using either functional annotations or network analysis and (iii) identification and prioritization of novel...
  • PLANEX

  • Referenced in 1 article [sw41320]
  • expression database, which allows for the functional identification of genes from a wide variety ... characterization of genes for functional identification and analysis of a gene’s dependency among other...
  • LncADeep

  • Referenced in 1 article [sw34142]
  • LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning. Motivation ... coding RNAs (lncRNAs), both identifying and functionally annotating them are essential to be addressed. Moreover ... present LncADeep, a novel lncRNA identification and functional annotation tool. For lncRNA identification, LncADeep integrates ... lncRNA identification and lncRNA–protein interaction prediction, and then presents a functional interpretation. We expect...
  • pLoc-mPlant

  • Referenced in 27 articles [sw25191]
  • cellular biochemistry is to identify the functions of proteins in the context of compartments that ... automated method for fast and accurate identification of the subcellular locations of uncharacterized proteins ... multi-locations may have some special biological functions. This kind of multiplex protein is particularly...
  • STAMP

  • Referenced in 6 articles [sw17264]
  • returned. Such similarity-search functionality is expected to facilitate the identification of transcription factors that ... more than one motif is inputted. These functions are expected to enable evolutionary studies...
  • PROFbval

  • Referenced in 2 articles [sw16905]
  • surface is closely linked to its function. The identification of extremely rigid or flexible surface ... solving the complex problem of identifying functionally important residues in proteins. Mobility is commonly measured...
  • LEON

  • Referenced in 2 articles [sw24616]
  • range of applications, including database searching, functional residue identification and structure prediction techniques. These applications...