• GEOquery

  • Referenced in 10 articles [sw17285]
  • GEOquery: a bridge between the Gene Expression Omnibus (GEO) and BioConductor. Microarray technology has become ... treatment conditions and disease states. The Gene Expression Omnibus (Barrett et al., 2005), developed ... repository of nearly 140 000 gene expression experiments. The BioConductor project (Gentleman...
  • BioPortal

  • Referenced in 13 articles [sw22917]
  • biomedical data resources such as the Gene Expression Omnibus (GEO), ClinicalTrials.gov, and ArrayExpress, through...
  • GEOmetadb

  • Referenced in 3 articles [sw17290]
  • powerful alternative search engine for the Gene Expression Omnibus. The NCBI Gene Expression Omnibus...
  • bibench

  • Referenced in 2 articles [sw32067]
  • Download gene expression data from the Gene Expression Omnibus. Gene Ontology enrichment analysis. Synthetic dataset...
  • shinyGEO

  • Referenced in 1 article [sw29565]
  • based application for analyzing gene expression omnibus datasets. The Gene Expression Omnibus...
  • PowerAtlas

  • Referenced in 2 articles [sw35411]
  • estimates based on 632 experiments from Gene Expression Omnibus (GEO). The PowerAtlas also permits investigators...
  • ExpTreeDB

  • Referenced in 1 article [sw17286]
  • human and mouse microarray experiments from Gene Expression Omnibus with gene signatures or profiles. Compared...
  • stemHypoxia

  • Referenced in 1 article [sw24426]
  • Full data available at Gene Expression Omnibus series GSE37761...
  • ScanGEO

  • Referenced in 1 article [sw29566]
  • expression data deposited in NCBI’s gene expression omnibus (GEO), such ... gene, and therefore require manual intervention to reanalyze multiple studies for user-specified gene sets ... Shiny web application designed to identify differentially expressed genes across all GEO studies matching user...
  • PLANEX

  • Referenced in 1 article [sw41320]
  • available GeneChip data obtained from the Gene Expression Omnibus (GEO) of the National Center ... wide co-expression database, which allows for the functional identification of genes from a wide...
  • pasilla

  • Referenced in 1 article [sw30029]
  • data that are provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181...
  • ImaGEO

  • Referenced in 1 article [sw29561]
  • comprehensive meta-analysis workflow starting from Gene Expression Omnibus (GEO) dataset identifiers. The application integrates...
  • Bioinformatics Toolbox

  • Referenced in 1 article [sw30054]
  • online databases such as the NCBI Gene Expression Omnibus and GenBank®. You can explore ... data to identify differentially expressed genes; identify copy number variants and SNPs in microarray data...
  • TIBS

  • Referenced in 0 articles [sw28735]
  • microarray data (320 samples) from the Gene Expression Omnibus (GEO) and ArrayExpress databases into ... Irritable Bowel Syndrome (TIBS). The gene expression change in IBS patients compared to healthy volunteers...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...
  • STAR

  • Referenced in 14 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • Bioconductor

  • Referenced in 319 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • CRAN

  • Referenced in 552 articles [sw04351]
  • R is ‘GNU S’, a freely available language...
  • mvtnorm

  • Referenced in 162 articles [sw04359]
  • R package mvtnorm: Multivariate Normal and t Distributions...