• GeneMark

  • Referenced in 8 articles [sw17182]
  • eukaryotes and viruses. The task of gene identification frequently confronting researchers working with both novel ... family of programs designed and tuned for gene prediction in prokaryotic, eukaryotic and viral genomic...
  • RankGene

  • Referenced in 15 articles [sw12319]
  • RankGene: identification of diagnostic genes based on expression data. Summary: RankGene is a program...
  • iTIS-PseTNC

  • Referenced in 15 articles [sw22449]
  • process for gene expression. Timely identification of the translation initiation site (TIS) is very important...
  • TETRA

  • Referenced in 12 articles [sw37891]
  • often lack suitable phylogenetic marker genes, rendering the identification of clones that are likely...
  • IMP

  • Referenced in 5 articles [sw07913]
  • expanded to support several gene-identification projects based on the positional candidate approach. IMP displays ... tool kit for physical mapping, sequencing, and gene-hunting projects...
  • EXPANDER

  • Referenced in 8 articles [sw30158]
  • java-based tool for analysis of gene expression and NGS data. It seamlessly integrates ... including: Data preprocessing and normalization; Identification of differential genes (including methods suitable for NGS data...
  • EBSeq

  • Referenced in 8 articles [sw17161]
  • experiments allow for the identification of differentially expressed (DE) genes and their corresponding isoforms ... accurate identifications are made. A number of methods exist for identifying DE genes...
  • DCGL

  • Referenced in 2 articles [sw17704]
  • expression analysis: DCG (Differential Coexpressed Gene) identification and DCL (Differentially Coexpressed Link) identification ... differential regulation analysis: DRG (Differential Regulated Gene) identification, DRL (Differential Regulated Link) identification, DRL visualization...
  • ProDiGe

  • Referenced in 3 articles [sw12407]
  • tens or hundreds of disease gene candidates, the identification of disease genes among the candidates ... prioritization, which could help the identification of new disease genes. It is freely available...
  • Prodigal

  • Referenced in 4 articles [sw16997]
  • Prodigal: prokaryotic gene recognition and translation initiation site identification. Background: The quality of automated gene ... Increasing the number of correct identifications, both of genes and of the translation initiation sites...
  • FragGeneScan

  • Referenced in 4 articles [sw17159]
  • FragGeneScan: predicting genes in short and error-prone reads. The advances of next-generation sequencing ... environmental sample (i.e. the metagenome). Identification of genes directly from short reads has become...
  • PLMLA

  • Referenced in 4 articles [sw36907]
  • various biological processes, especially in gene regulation. Identification of protein methylation and acetylation sites would...
  • ToppGene Suite

  • Referenced in 8 articles [sw30169]
  • analysis and (iii) identification and prioritization of novel disease candidate genes in the interactome. Functional...
  • iHMMune-align

  • Referenced in 2 articles [sw23147]
  • Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences. MOTIVATION ... somatic mutation. The correct identification of the germline genes that make up a variable ... compared to that of other immunoglobulin gene alignment utilities using both clonally related and randomly ... align provides a more accurate identification of component germline genes than other currently available...
  • Exogean

  • Referenced in 2 articles [sw17149]
  • genomic DNA. Background: Accurate and automatic gene identification in eukaryotic genomic DNA is more than ... method that best reproduces protein coding gene annotations from human experts, in terms of identifying...
  • iTIS-PseKNC

  • Referenced in 3 articles [sw25196]
  • iTIS-PseKNC: Identification of Translation Initiation Site in human genes using pseudo k-tuple nucleotides ... identify Translation Initiation Site (TIS) in human genes timely and accurately. It is thus highly ... automatic and accurate computational model for identification of TIS. Considerable improvements have been achieved ... reliable automated systems for TIS identification in human genes is still a challenging task...
  • REGANOR

  • Referenced in 1 article [sw23031]
  • state of genome annotation requires automated gene identification methods to cope with the influence ... server and a database of high-quality gene predictions ... server is a resource for gene identification in prokaryote genome sequences. It implements our previously...
  • oligo

  • Referenced in 9 articles [sw06102]
  • substantially improve accuracy and precision of the gene expression measurements, relative to ad hoc procedures ... designed for the identification of DNA sequence variants in specific genes or regions...
  • PolySearch

  • Referenced in 1 article [sw16755]
  • been assessed in tasks such as gene synonym identification ... protein–protein interaction identification and disease gene identification using a variety of manually assembled ‘gold...
  • MiRFinder

  • Referenced in 3 articles [sw29577]
  • sequence-specific post-transcriptional regulators of gene expression. Identification of miRNAs is an important requirement...