• GeneSrF

  • Referenced in 67 articles [sw08254]
  • GeneSrF: gene selection with random forests (v. 20070524). GeneSrF is a web tool for gene ... uses random forest. Two approaches for gene selection are used: one is targeted towards identifying...
  • SparseLOGREG

  • Referenced in 26 articles [sw11449]
  • Simple and Efficient Algorithm for Gene Selection using Sparse Logistic Regression. Motivation: This paper gives ... real-world problems like identifying marker genes and building a classifier in the context ... diagnosis using microarray data. Results: The gene selection method suggested in this paper is demonstrated...
  • HykGene

  • Referenced in 9 articles [sw23981]
  • HykGene: a hybrid approach for selecting marker genes for phenotype classification using microarray gene expression ... approaches have been proposed for this gene selection problem. Most of the previous gene ranking ... sweep-line algorithm and marker genes are selected by collapsing dense clusters. Empirical study using ... approach is capable of selecting relatively few marker genes while offering the same or better...
  • Onto-Tools

  • Referenced in 10 articles [sw10974]
  • determined by the extent to which the genes present on the array represent specific pathways ... tool that allows the user to select genes that represent given functional categories. Onto-Translate...
  • TIGRESS

  • Referenced in 9 articles [sw23826]
  • TIGRESS: Trustful Inference of Gene REgulation using Stability Selection. BACKGROUND: Inferring the structure of gene ... regulatory networks (GRN) from a collection of gene expression data has many potential applications, from ... investigate the performance of a popular feature selection method, least angle regression (LARS) combined with ... TIGRESS (for Trustful Inference of Gene REgulation with Stability Selection), was ranked among...
  • OSCAR

  • Referenced in 47 articles [sw03026]
  • supervised clustering of predictors with OSCAR. Variable selection can be challenging, particularly in situations with ... predictors with possibly high correlations, such as gene expression data. In this article ... algorithm for regression), is proposed to simultaneously select variables while grouping them into predictive clusters...
  • JCat

  • Referenced in 7 articles [sw17356]
  • usage to most sequenced prokaryotes and selected eukaryotic gene expression hosts was developed to improve...
  • RankGene

  • Referenced in 14 articles [sw12319]
  • useful tool in gene expression analysis and feature selection. Availability: http://genomics10.bu.edu/yangsu/rankgene...
  • PCP

  • Referenced in 3 articles [sw30033]
  • implements leading pattern classification and gene selection algorithms and incorporates cross-validation estimation of classifier ... performance. Importantly, the implementation integrates gene selection and class prediction stages, which is vital...
  • ErmineJ

  • Referenced in 4 articles [sw30047]
  • over-representation” of groups among genes selected as being differentially expressed or otherwise of interest...
  • compound.Cox

  • Referenced in 4 articles [sw17899]
  • package compound.Cox. Estimation and Gene Selection Based on the Compound Covariate Method Under ... regression for survival data with high-dimensional gene expressions. Available are statistical methods in Emura...
  • CLENCH

  • Referenced in 4 articles [sw13899]
  • functional category analysis for lists of genes selected by the user. Availability: http://www.personal.psu.edu/nhs109/Clench...
  • multiClust

  • Referenced in 2 articles [sw31460]
  • clinically relevant subgroups of patients. Feature (gene) selection is a critical and an integral part ... many feature selection and clustering methods to identify the relevant genes and perform clustering ... choice of combination of methods for gene selection and clustering with ease. Using multiClust ... provided that the appropriate number of genes is selected. However, different gene ranking and selection...
  • ASTALAVISTA

  • Referenced in 3 articles [sw17177]
  • REFSEQ, ENSEMBL) as well as for genes selected by the user according to common functional/structural...
  • rL-GenSVM

  • Referenced in 2 articles [sw34760]
  • Feature selection and tumor classification for microarray data using relaxed Lasso and generalized multi-class ... challenging task to select the feature genes related to the classification from the high-dimensional ... normalized. Secondly, using relaxed Lasso to select feature gene sets on training set, and finally ... method proposed in this paper selects fewer feature genes and achieves higher classification accuracy...
  • propOverlap

  • Referenced in 1 article [sw33153]
  • package propOverlap: Feature (gene) selection based on the Proportional Overlapping Scores. A package for selecting ... measuring the proportional overlapping score for each gene avoiding the outliers effect. The used measure ... Overlapping Score (POS)” technique for feature selection. A gene mask which represents a gene ... feature). The set size of the selected genes might be set by the user...
  • ClueGO

  • Referenced in 9 articles [sw22916]
  • lists of genes). From the ontology sources used, the terms are selected by different filter...
  • maSigPro

  • Referenced in 10 articles [sw11024]
  • identify differentially expressed genes, and in second a variable selection strategy is applied to study...
  • SNPs3D

  • Referenced in 5 articles [sw30035]
  • SNPs3D: Candidate gene and SNP selection for association studies. Background: The relationship between disease susceptibility ... three primary modules. One module identifies which genes are candidates for involvement in a specified...
  • CLIFF

  • Referenced in 10 articles [sw35898]
  • data, the high dimensionality of the feature (gene) space, and the fact that many features ... relevant features, and uses this ranking to select the features to be used ... selected features. On a well-studied problem involving 72 leukemia samples and 7130 genes ... approaches that do not consider the feature selection issue, and produces a result that...