• iRSpot-PseDNC

  • Referenced in 65 articles [sw22437]
  • driving force of evolution, recombination provides natural new combinations of genetic variations. Rather than randomly...
  • iRSpot-TNCPseAAC

  • Referenced in 31 articles [sw22412]
  • Pseudo Amino Acid Components. Meiosis and recombination are the two opposite aspects that coexist ... evolution by generating natural genetic variations, meiotic recombination plays a very important role ... useful insights into the mechanism of meiotic recombination and the process of genome evolution ... from the DNA sample according to its genetic codes. The former was used to incorporate...
  • iRSpot-GAEnsC

  • Referenced in 4 articles [sw25197]
  • combined to form new combination of genetic variations. Recombination process does not occur randomly across ... conventional methods. Looking at the significance of recombination spots, it is indispensable to develop ... which is formed through majority voting and genetic algorithm (GA). The performance of GA-based...
  • LAMARC

  • Referenced in 7 articles [sw11443]
  • estimates population-genetic parameters such as population size, population growth rate, recombination rate, and migration...
  • fastsimcoal

  • Referenced in 6 articles [sw35122]
  • variety of genetic markers scattered over very long genomic regions with arbitrary recombination patterns under...
  • ICIMapping

  • Referenced in 2 articles [sw20323]
  • IciMapping) is a software which constructs genetic linkage maps and maps QTL by simple interval ... include: Dominant/recessive markers are considered in recombination frequency estimation, map construction and QTL mapping ... build the integrated map from multiple genetic linkage maps sharing common markers. A tool called ... used to estimate the pair-wise recombination frequency in bi-parental population. Many markers...
  • Recan

  • Referenced in 1 article [sw33214]
  • allows to construct genetic distance plots to explore and discover recombination events in viral genomes...
  • onemap

  • Referenced in 3 articles [sw20322]
  • package onemap: Software for constructing genetic maps in experimental crosses: full-sib, RILs ... marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems ... simultaneously estimating linkage and linkage phases (genetic map construction). All analysis are based on multipoint...
  • Sugal

  • Referenced in 3 articles [sw25296]
  • Genetic Algorithms. Sugal includes a generalised genetic algorithm, which supports the major popular versions ... paper discusses the Sugal GA, showing how recombining the features of the popular algorithms results...
  • MSMS

  • Referenced in 7 articles [sw34261]
  • MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus ... selective sweeps in structured populations or the genetic footprint of local adaptation. The implementation...
  • FlatNJ

  • Referenced in 1 article [sw20300]
  • whole HIV genome sequences, where recombination has taken place, fluorescent proteins in corals, where ancestral ... FlatNJ can facilitate the study of genetic variation in the underlying molecular sequence data ... investigate processes such as intra-locus recombination. FlatNJ has been implemented in Java...
  • alleHap

  • Referenced in 0 articles [sw15237]
  • alleles, imputation of genetic missing data and reconstruction of non-recombinant haplotypes from pedigree databases...
  • discoal

  • Referenced in 1 article [sw34260]
  • soft sweeps—even those occurring a large genetic distance away from the simulated locus. discoal ... with recurrent mutation to the adaptive allele, recombination, and gene conversion, under non-equilibrium demographic...
  • PeptX

  • Referenced in 2 articles [sw35178]
  • heuristic approach. We developed a framework for Genetic Algorithms to optimize peptides for the binding ... convergence of the population while recombination operators have minor influence and (2) that five different ... operators and scoring functions of the Genetic Algorithm...
  • HAPLORE

  • Referenced in 2 articles [sw36930]
  • haplotype reconstruction in general pedigrees without recombination. Results: We test the effectiveness and the efficiency ... algorithm, can be used in genetic linkage and association studies. Availability: The program...
  • AGGRESCAN

  • Referenced in 3 articles [sw22400]
  • often hampered by the accumulation of recombinant proteins into aggregates. Thus, the development of methods ... proteins and to predict the effect of genetic mutations on their deposition propensities. It also ... anticipation of aggregation phenomena during storage or recombinant production of bioactive polypeptides or polypeptide sets...
  • CARTHAGENE

  • Referenced in 3 articles [sw23159]
  • approach to two important problems in genetic mapping: automatically ordering markers to obtain a multipoint ... algorithm provides maximum likelihood recombination fractions, while the local search techniques look for orders that...
  • TESD

  • Referenced in 2 articles [sw35415]
  • transposition and excision rates, the recombination rate and the coefficient of selection against TE insertions ... useful for teaching population genetics and genomics...
  • LocusZoom

  • Referenced in 1 article [sw29110]
  • hundreds of loci associated with common human genetic diseases and traits. We have developed ... genomic position, local linkage disequilibrium (LD) and recombination patterns and the positions of genes...
  • dlmap

  • Referenced in 1 article [sw24571]
  • each chromosome based on the genetic variation due to grouped markers on the chromosome ... pedigree effects. Applicable to backcrosses, doubled haploids, recombinant inbred lines, F2 intercrosses, and association mapping...