• TreeDT

  • Referenced in 2 articles [sw37015]
  • form of haplotype trees, information about historical recombinations in the population: A haplotype tree constructed ... proportions of disease-associated chromosomes, suggesting shared genetic history for those and a likely disease...
  • SnpEff

  • Referenced in 2 articles [sw17001]
  • frequency is proportional to the recombination frequency (i.e., highest in the middle of chromosome arms ... UTRs are reservoirs for genetic variations that changes the termini of proteins during evolution...
  • Genomepop

  • Referenced in 1 article [sw08977]
  • increasing interest in forward population genetic simulation and efficient new tools have been developed recently ... demonstrated by studying the impact of intracodon recombination on global and site-specific dN/dS estimation...
  • phyloscanner

  • Referenced in 1 article [sw29337]
  • within an infected individual may be genetically distinct, with patterns of relatedness amongst infectious particles ... connected by within-host evolution, except where recombinant types emerge. Low-level contamination is flagged...
  • TreeQA

  • Referenced in 1 article [sw20041]
  • regions in the genome that contribute to genetically complex phenotypes such as morphology or disease ... genomic regions exhibiting no evidence of historical recombination. By efficient algorithm design and implementation, TreeQA...
  • Macaulay2

  • Referenced in 1821 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • Maple

  • Referenced in 5270 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 6213 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • R

  • Referenced in 9109 articles [sw00771]
  • R is a language and environment for statistical...
  • SageMath

  • Referenced in 1856 articles [sw00825]
  • Sage (SageMath) is free, open-source math software...
  • TSPLIB

  • Referenced in 687 articles [sw00983]
  • TSPLIB is a library of sample instances for...
  • UCI-ml

  • Referenced in 3224 articles [sw04074]
  • UC Irvine Machine Learning Repository. We currently maintain...
  • CPLEX

  • Referenced in 2676 articles [sw04082]
  • IBM® ILOG® CPLEX® offers C, C++, Java, .NET...
  • MOCK

  • Referenced in 43 articles [sw04156]
  • Exploiting the trade-off-the benefits of multiple...
  • pls

  • Referenced in 32 articles [sw04365]
  • R package pls: Partial Least Squares and Principal...
  • ape

  • Referenced in 58 articles [sw04569]
  • R package ape: Analyses of Phylogenetics and Evolution...
  • PLINK

  • Referenced in 64 articles [sw04581]
  • PLINK is a free, open-source whole genome...
  • Rfam

  • Referenced in 33 articles [sw04637]
  • The Rfam database is a collection of RNA...
  • Genocop

  • Referenced in 1092 articles [sw04707]
  • Genocop, by Zbigniew Michalewicz, is a genetic algorithm...