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  • LAPACK
  • Referenced in 1713 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...

  • Maple
  • Referenced in 5403 articles [sw00545]
  • The result of over 30 years of cutting...

  • Mathematica
  • Referenced in 6445 articles [sw00554]
  • Almost any workflow involves computing results, and that...

  • Matlab
  • Referenced in 13702 articles [sw00558]
  • MATLAB® is a high-level language and interactive...

  • R
  • Referenced in 10196 articles [sw00771]
  • R is a language and environment for statistical...

  • STAR
  • Referenced in 14 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

  • Bioconductor
  • Referenced in 328 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...

  • CRAN
  • Referenced in 570 articles [sw04351]
  • R is ‘GNU S’, a freely available language...

  • oligo
  • Referenced in 9 articles [sw06102]
  • (R) A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon...

  • SciPy
  • Referenced in 791 articles [sw06293]
  • SciPy (pronounced ”Sigh Pie”) is open-source software...

  • WEKA
  • Referenced in 306 articles [sw06435]
  • WEKA: Waikato Environment for Knowledge Analysis. WEKA is...

  • edgeR
  • Referenced in 53 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...

  • igraph
  • Referenced in 215 articles [sw07066]
  • igraph is a software package for complex network...

  • Biopython
  • Referenced in 20 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...

  • RankProd
  • Referenced in 6 articles [sw07961]
  • RankProd: Rank Product method for identifying differentially expressed...

  • Soap
  • Referenced in 38 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...

  • Sweave
  • Referenced in 46 articles [sw10621]
  • Sweave is a tool that allows to embed...

  • knitr
  • Referenced in 70 articles [sw11224]
  • knitr: A General-Purpose Package for Dynamic Report...

  • snpStats
  • Referenced in 7 articles [sw11396]
  • snpStats: SnpMatrix and XSnpMatrix classes and methods. Bioconductor...

  • C4.5
  • Referenced in 1166 articles [sw12176]
  • C4.5: programs for machine learning. (C4.5 has been...