• LAPACK

  • Referenced in 1713 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 5403 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 6445 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13702 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 10196 articles [sw00771]
  • R is a language and environment for statistical...
  • STAR

  • Referenced in 14 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • Bioconductor

  • Referenced in 328 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • CRAN

  • Referenced in 570 articles [sw04351]
  • R is ‘GNU S’, a freely available language...
  • oligo

  • Referenced in 9 articles [sw06102]
  • (R) A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon...
  • SciPy

  • Referenced in 791 articles [sw06293]
  • SciPy (pronounced ”Sigh Pie”) is open-source software...
  • WEKA

  • Referenced in 306 articles [sw06435]
  • WEKA: Waikato Environment for Knowledge Analysis. WEKA is...
  • edgeR

  • Referenced in 53 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...
  • igraph

  • Referenced in 215 articles [sw07066]
  • igraph is a software package for complex network...
  • Biopython

  • Referenced in 20 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • RankProd

  • Referenced in 6 articles [sw07961]
  • RankProd: Rank Product method for identifying differentially expressed...
  • Soap

  • Referenced in 38 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...
  • Sweave

  • Referenced in 46 articles [sw10621]
  • Sweave is a tool that allows to embed...
  • knitr

  • Referenced in 70 articles [sw11224]
  • knitr: A General-Purpose Package for Dynamic Report...
  • snpStats

  • Referenced in 7 articles [sw11396]
  • snpStats: SnpMatrix and XSnpMatrix classes and methods. Bioconductor...
  • C4.5

  • Referenced in 1166 articles [sw12176]
  • C4.5: programs for machine learning. (C4.5 has been...