• Maple

• Referenced in 5177 articles [sw00545]
• The result of over 30 years of cutting...

• Mathematica

• Referenced in 6075 articles [sw00554]
• Almost any workflow involves computing results, and that...

• Matlab

• Referenced in 12557 articles [sw00558]
• MATLAB® is a high-level language and interactive...

• R

• Referenced in 8776 articles [sw00771]
• R is a language and environment for statistical...

• STAR

• Referenced in 13 articles [sw02515]
• STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

• Bioconductor

• Referenced in 307 articles [sw04205]
• Bioconductor provides tools for the analysis and comprehension...

• CRAN

• Referenced in 498 articles [sw04351]
• R is ‘GNU S’, a freely available language...

• LIBSVM

• Referenced in 1114 articles [sw04879]
• LIBSVM is a library for Support Vector Machines...

• oligo

• Referenced in 9 articles [sw06102]
• (R) A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon...

• WEKA

• Referenced in 292 articles [sw06435]
• WEKA: Waikato Environment for Knowledge Analysis. WEKA is...

• edgeR

• Referenced in 49 articles [sw06936]
• edgeR: a Bioconductor package for differential expression analysis...

• igraph

• Referenced in 169 articles [sw07066]
• igraph is a software package for complex network...

• Biopython

• Referenced in 19 articles [sw07357]
• Biopython: freely available Python tools for computational molecular...

• RankProd

• Referenced in 6 articles [sw07961]
• RankProd: Rank Product method for identifying differentially expressed...

• Soap

• Referenced in 38 articles [sw08915]
• SOAP: short oligonucleotide alignment program. We have developed...

• Sweave

• Referenced in 44 articles [sw10621]
• Sweave is a tool that allows to embed...

• knitr

• Referenced in 54 articles [sw11224]
• knitr: A General-Purpose Package for Dynamic Report...

• snpStats

• Referenced in 7 articles [sw11396]
• snpStats: SnpMatrix and XSnpMatrix classes and methods. Bioconductor...

• C4.5

• Referenced in 1134 articles [sw12176]
• C4.5: programs for machine learning. (C4.5 has been...

• COPASI

• Referenced in 66 articles [sw12253]
• COPASI: biochemical network simulator. COPASI is a software...