• BALD

  • Referenced in 2 articles [sw20895]
  • Disequilibrium information. Functions for the Genome-Wide Association Studies including simulation of SNPs data, constrained...
  • GBOOST

  • Referenced in 2 articles [sw25801]
  • gene interactions in genome-wide case control studies. Collecting millions of genetic variations is feasible ... problems in genome-wide association studies (GWAS). Boolean operation-based screening and testing (BOOST...
  • BlueSNP

  • Referenced in 1 article [sw12005]
  • package for highly scalable genome-wide association studies using Hadoop clusters. Computational workloads for genome...
  • adjclust

  • Referenced in 2 articles [sw28002]
  • application fields in bioinformatics include Genome-Wide Association Studies or Hi-C data analysis, where...
  • MASTOR

  • Referenced in 2 articles [sw23134]
  • Genetics 92(5):625-666: Genetic association studies often sample individuals with known familial relationships ... mixed-model, retrospective score test for genetic association with a quantitative trait. MASTOR achieves high ... sample can still contribute to the association analysis because of the dependence among genotypes. Similarly ... computationally feasible and practical in genome-wide association studies. We apply MASTOR to data...
  • GWASpoly

  • Referenced in 1 article [sw42379]
  • Software for Genome-Wide Association Studies in Autopolyploids and Its Application ... Potato. Genome-wide association studies (GWAS) are widely used in diploid species to study complex ... potato diversity panel and, consistent with previous studies, significant QTL for tuber shape ... heritability (h2) of 0.3, the median genome-wide power was only 0.01. Our results indicate...
  • ParallABEL

  • Referenced in 1 article [sw33304]
  • library for generalized parallelization of genome-wide association studies. Conclusions: Executing genome-wide association analysis ... performance, and simplify the parallelization of GWA studies. ParallABEL is a user-friendly parallelization...
  • repfdr

  • Referenced in 1 article [sw23976]
  • tool for replicability analysis for genome-wide association studies. MOTIVATION: Identification of single nucleotide polymorphisms ... that are associated with a phenotype in more than one study ... great scientific interest in the genome-wide association studies (GWAS) research. The empirical Bayes approach...
  • r2VIM

  • Referenced in 1 article [sw27009]
  • Method for Random Forests in Genome-Wide Association Studies. Machine learning methods and in particular ... standard single SNP analyses in genome-wide association studies (GWAS). RFs provide variable importance measures...
  • snpQC

  • Referenced in 1 article [sw17243]
  • genotyping array data. In genome-wide association studies, quality control (QC) of genotypes is important ... settings with ongoing genotyping (e.g. estimation of genomic breeding values). Here we discuss snpqc ... Illumina SNP array data. It applies a wide range of common quality metrics with user ... genotyping laboratory and downstream genome-wide association study or genomic prediction...
  • GLOGS

  • Referenced in 1 article [sw23133]
  • Mixed model-based approaches to genome-wide association studies (GWAS) of binary traits in related ... However, they are technically challenging. GLOGS (Genome-wide LOGistic mixed model/Score test) addresses such challenges...
  • GeneFriends

  • Referenced in 1 article [sw41319]
  • genome resequencing efforts and genome-wide association studies often identify loci containing novel genes...
  • REMI

  • Referenced in 1 article [sw41504]
  • information and its application in genomewide association studies. We consider the problem of variable selection ... This problem is motivated by genome-wide association studies (GWASs) with millions of genotyped single...
  • PERMORY

  • Referenced in 1 article [sw35193]
  • wide association testing. Motivation: In genome-wide association studies (GWAS) examining hundreds of thousands ... enables efficient permutation testing on a genome-wide scale. Our algorithm does not rely...
  • diffuStats

  • Referenced in 1 article [sw39966]
  • derive from gene expression, genome-wide association studies, protein domains or metabolomics profiling, are propagated...
  • LocusZoom

  • Referenced in 1 article [sw29110]
  • genome-wide association scan results. Genome-wide association studies (GWAS) have revealed hundreds of loci...
  • ShapePheno

  • Referenced in 1 article [sw14414]
  • biology. For example, in genome-wide association studies technological advances have rendered genotyping cheap, leaving...
  • EPIQ

  • Referenced in 1 article [sw26695]
  • other organisms. Unlike single-locus genome-wide association studies (GWAS), which proved efficient in detecting...
  • TPOT-MDR

  • Referenced in 1 article [sw18807]
  • analysis of complex diseases in genome-wide association studies using genetic programming. Machine learning...
  • GWAPP

  • Referenced in 1 article [sw29292]
  • organism for understanding natural variation. Genome-wide association studies (GWAS) have proven a useful technique...