• Gegenees

• Referenced in 1 article [sw38917]
• genomes, give phylogenomic overviews and define genomic signatures unique for specified target groups...

• SigHunt

• Referenced in 1 article [sw30007]
• identifies putative GIs. We calculate a genomic signature as a vector of tetranucleotide ... from the credibility interval of their local genomic density using a newly developed discrete interval...

• EasyCodeML

• Referenced in 1 article [sw37901]
• analysis of selection using CodeML. The genomic signatures of positive selection and evolutionary constraints...

• TETRA

• Referenced in 12 articles [sw37891]
• same genome difficult or impossible. In such cases, the analysis of intrinsic DNA-signatures like...

• signeR

• Referenced in 1 article [sw41478]
• signature discovery. It is designed to analyze single nucleotide variaton (SNV) counts in cancer genomes ... features as well. Functionalities to characterize signatures or genome samples according to exposure patterns...

• epistasis

• Referenced in 0 articles [sw17801]
• reconstruct an underlying network of genomic signatures of high-dimensional epistatic selection from partially observed ... long-range linkage disequilibrium structure of genomes and thus reveals aberrant marker-marker associations that...

• OmegaPlus

• Referenced in 1 article [sw34973]
• accumulation of molecular sequence data. Analyzing whole-genome data (as obtained from next-generation sequencers ... samples allows to detect signatures of positive selection along the genome and therefore identify potentially...

• mCSM

• Referenced in 2 articles [sw16882]
• based signatures. Motivation: Mutations play fundamental roles in evolution by introducing diversity into genomes. Missense ... called mCSM, which relies on graph-based signatures. These encode distance patterns between atoms...

• dbCAN

• Referenced in 1 article [sw17020]
• provide a capability for automated CAZyme signature domain-based annotation for any given protein data ... genome) submitted to our server. To accomplish this, we have explicitly defined a signature domain...

• JSpeciesWS

• Referenced in 1 article [sw37890]
• calculating the extent of identity between two genomes, a parameter routinely used in the process ... well as correlation indexes of tetra-nucleotide signatures (Tetra). In addition, it provides a Tetra ... function, which allows to rapidly compare selected genomes against a continuously updated reference database with...

• ReactomeFIViz

• Referenced in 1 article [sw25625]
• related to their studies, search for gene signatures from gene expression data sets, reveal pathways ... genes in a list, and integrate multiple genomic data types into a pathway context using...

• NRPSpredictor2

• Referenced in 2 articles [sw25365]
• newly detected NRPS Adenylation (A-) domains by genome sequencing efforts is of great importance ... sequence alone can be achieved through sequence signatures or, more accurately, through machine learning methods...

• MrTADFinder

• Referenced in 2 articles [sw34259]
• model preserves the observed coverage of each genomic bin as well as the distance dependence ... identified domain boundaries are marked by characteristic signatures in chromatin marks and transcription factors...

• SylArray

• Referenced in 1 article [sw35229]
• knowledge, filtered 3′UTR sequences for the genome of interest, or a set of genes ... algorithm for detection of miRNA or siRNA signatures in those sequences. An intuitive system...

• GAP

• Referenced in 3189 articles [sw00320]
• GAP is a system for computational discrete algebra...

• Magma

• Referenced in 3315 articles [sw00540]
• Computer algebra system (CAS). Magma is a large...

• Maple

• Referenced in 5373 articles [sw00545]
• The result of over 30 years of cutting...

• MapReduce

• Referenced in 263 articles [sw00546]
• MapReduce is a new parallel programming model initially...

• Mathematica

• Referenced in 6355 articles [sw00554]
• Almost any workflow involves computing results, and that...

• Matlab

• Referenced in 13544 articles [sw00558]
• MATLAB® is a high-level language and interactive...