• Gegenees

  • Referenced in 1 article [sw38917]
  • genomes, give phylogenomic overviews and define genomic signatures unique for specified target groups...
  • SigHunt

  • Referenced in 1 article [sw30007]
  • identifies putative GIs. We calculate a genomic signature as a vector of tetranucleotide ... from the credibility interval of their local genomic density using a newly developed discrete interval...
  • EasyCodeML

  • Referenced in 1 article [sw37901]
  • analysis of selection using CodeML. The genomic signatures of positive selection and evolutionary constraints...
  • TETRA

  • Referenced in 12 articles [sw37891]
  • same genome difficult or impossible. In such cases, the analysis of intrinsic DNA-signatures like...
  • signeR

  • Referenced in 1 article [sw41478]
  • signature discovery. It is designed to analyze single nucleotide variaton (SNV) counts in cancer genomes ... features as well. Functionalities to characterize signatures or genome samples according to exposure patterns...
  • epistasis

  • Referenced in 0 articles [sw17801]
  • reconstruct an underlying network of genomic signatures of high-dimensional epistatic selection from partially observed ... long-range linkage disequilibrium structure of genomes and thus reveals aberrant marker-marker associations that...
  • OmegaPlus

  • Referenced in 1 article [sw34973]
  • accumulation of molecular sequence data. Analyzing whole-genome data (as obtained from next-generation sequencers ... samples allows to detect signatures of positive selection along the genome and therefore identify potentially...
  • mCSM

  • Referenced in 2 articles [sw16882]
  • based signatures. Motivation: Mutations play fundamental roles in evolution by introducing diversity into genomes. Missense ... called mCSM, which relies on graph-based signatures. These encode distance patterns between atoms...
  • dbCAN

  • Referenced in 1 article [sw17020]
  • provide a capability for automated CAZyme signature domain-based annotation for any given protein data ... genome) submitted to our server. To accomplish this, we have explicitly defined a signature domain...
  • JSpeciesWS

  • Referenced in 1 article [sw37890]
  • calculating the extent of identity between two genomes, a parameter routinely used in the process ... well as correlation indexes of tetra-nucleotide signatures (Tetra). In addition, it provides a Tetra ... function, which allows to rapidly compare selected genomes against a continuously updated reference database with...
  • ReactomeFIViz

  • Referenced in 1 article [sw25625]
  • related to their studies, search for gene signatures from gene expression data sets, reveal pathways ... genes in a list, and integrate multiple genomic data types into a pathway context using...
  • NRPSpredictor2

  • Referenced in 2 articles [sw25365]
  • newly detected NRPS Adenylation (A-) domains by genome sequencing efforts is of great importance ... sequence alone can be achieved through sequence signatures or, more accurately, through machine learning methods...
  • MrTADFinder

  • Referenced in 2 articles [sw34259]
  • model preserves the observed coverage of each genomic bin as well as the distance dependence ... identified domain boundaries are marked by characteristic signatures in chromatin marks and transcription factors...
  • SylArray

  • Referenced in 1 article [sw35229]
  • knowledge, filtered 3′UTR sequences for the genome of interest, or a set of genes ... algorithm for detection of miRNA or siRNA signatures in those sequences. An intuitive system...
  • GAP

  • Referenced in 3189 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • Magma

  • Referenced in 3315 articles [sw00540]
  • Computer algebra system (CAS). Magma is a large...
  • Maple

  • Referenced in 5373 articles [sw00545]
  • The result of over 30 years of cutting...
  • MapReduce

  • Referenced in 263 articles [sw00546]
  • MapReduce is a new parallel programming model initially...
  • Mathematica

  • Referenced in 6355 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...