• IGV

  • Referenced in 3 articles [sw17276]
  • Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Data visualization ... challenges to visualization tools. The Integrative Genomics Viewer (IGV) is a high-performance viewer that ... intuitive user experience at all levels of genome resolution. A key characteristic...
  • Tabix

  • Referenced in 4 articles [sw28170]
  • command line and enables genome viewers to support huge data files and remote custom tracks...
  • Genoviz

  • Referenced in 2 articles [sw17304]
  • into applications, a desirable feature of genome viewers. Visualization capabilities of the Genoviz SDK include ... automated layout of features along genetic or genomic axes; support for user interactions with graphical...
  • CGView

  • Referenced in 2 articles [sw22993]
  • CGView - Circular Genome Viewer- CGView Comparison Tool (CCT): CGView is a Java package for generating ... high quality, zoomable maps of circular genomes. Its primary purpose is to serve...
  • IGV-plus

  • Referenced in 1 article [sw13252]
  • GATK) in the genome browser integrative genomics viewer (IGV), in order to create a centralized...
  • TM4

  • Referenced in 12 articles [sw26846]
  • tool for studying gene expression on a genomic scale. Advances in the precision of array ... Microarray Data Analysis System (MIDAS), and Multiexperiment Viewer (MeV), as well as a Minimal Information...
  • IslandViewer

  • Referenced in 1 article [sw30008]
  • selected genomes are now facilitated through a highly requested side-by-side viewer. IslandViewer improvements...
  • Bambino

  • Referenced in 2 articles [sw17426]
  • identification of somatic mutations. The assembly viewer can display reads in the context of either ... provided or automatically generated reference sequence, retrieve genome annotation features from a UCSC genome annotation...
  • iPath

  • Referenced in 3 articles [sw16937]
  • visualizing and analyzing metabolic pathways. An interactive viewer provides straightforward navigation through various pathways ... external data. For example, by merging human genome data with two important gut commensals, iPath...
  • HPMV

  • Referenced in 1 article [sw17017]
  • genetic disorders. Our Human Protein Mutation Viewer (HPMV) is intended to explore the biomolecular mechanistic ... synonymous human mutations in protein-coding genomic regions. The tool helps to assess whether protein ... UniProt accessions with mutations (e.g. HGVS nomenclature), genome coordinates, or FASTA sequences. As output, HPMV ... conserved domains and a simple 3D viewer mapping the mutation to known PDB structures...
  • PIRSF

  • Referenced in 1 article [sw22978]
  • structure similarity, domain architecture, functional association, genome context, and phyletic pattern. The results of classification ... summarized in PIRSF family reports with graphical viewers for taxonomic distribution, domain architecture, family hierarchy...
  • Gene Resource Locator

  • Referenced in 3 articles [sw37100]
  • growing interest in transcriptome analysis based on genomic data. The Gene Resource Locator (GRL) assembles ... Flash technology to build a dynamic web viewer that facilitates browsing through the millions...
  • ARGO

  • Referenced in 2 articles [sw35519]
  • Reliable recognition of the promoters in eukaryotic genomes remains an open issue. This is largely ... regions of the eukaryotic genes. The ARGO_Viewer package was developed for the recognition...
  • manhattanly

  • Referenced in 0 articles [sw17786]
  • from the R console, in the ’RStudio’ viewer pane, in ’R Markdown’ documents ... dimensional data analysis such as a (epi)genome wide association study (GWAS or EWAS...
  • Matlab

  • Referenced in 13460 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9810 articles [sw00771]
  • R is a language and environment for statistical...
  • bioperl

  • Referenced in 23 articles [sw10579]
  • The bioperl toolkit: Perl modules for the life...
  • GATK

  • Referenced in 17 articles [sw12019]
  • The genome analysis toolkit: a MapReduce framework for...
  • Samtools

  • Referenced in 22 articles [sw14583]
  • Samtools is a suite of programs for interacting...