• DYANA

  • Referenced in 11 articles [sw08628]
  • sampling of conformation space in protein structure calculations with the TAD algorithm implemented ... residues, and the globular protein Antennapedia (C39S) homeodomain, which comprises unstructured polypeptide segments...
  • GlobPlot

  • Referenced in 7 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder. A major challenge in the proteomics ... structural genomics era is to predict protein structure and function, including ... identification of those proteins that are partially or wholly unstructured. Non-globular sequence segments often ... design of constructs corresponding to globular proteins, as needed for many biochemical studies, particularly structural...
  • MultiLoc2

  • Referenced in 8 articles [sw22456]
  • prediction. BACKGROUND: Knowledge of subcellular localization of proteins is crucial to proteomics, drug target discovery ... method. One version is specialized for globular proteins and predicts up to five localizations, whereas...
  • Helanal

  • Referenced in 5 articles [sw29681]
  • Helanal: A program to characterize helixgeometry in proteins. A detailed analysis of structural and position ... secondary structure formation in globular proteins. Here we describe an algorithm that quantifies the geometry...
  • PHAT

  • Referenced in 3 articles [sw17270]
  • properties, and thus are dominated by globular proteins. However, since transmembrane regions of a protein ... distinctly different environment than globular proteins, one would expect generalized substitution matrices to be inappropriate...
  • ELM

  • Referenced in 8 articles [sw17021]
  • whole protein. While on-line resources are available for revealing globular domains in sequences, there ... globular domain resources, yet these are as important for the function of multidomain proteins. Short ... used for cell compartment targeting, proteinprotein interaction, regulation by phosphorylation, acetylation, glycosylation ... investigating candidate short non-globular functional motifs in eukaryotic proteins, aiming to fill the void...
  • FoldUnfold

  • Referenced in 4 articles [sw16916]
  • introduced to detect disordered regions in a protein sequence. We have demonstrated that regions with ... been tested on datasets of globular proteins (559 proteins) and long disordered protein segments...
  • AGGRESCAN

  • Referenced in 3 articles [sw22400]
  • involved in the aggregation of disease-related proteins and to predict the effect of genetic ... differential aggregation properties displayed by globular proteins, natively unfolded polypeptides, amyloidogenic proteins and proteins found...
  • PDB-REPRDB

  • Referenced in 5 articles [sw26865]
  • protein structure studies must address globular and membrane proteins separately, this new elimination factor, which...
  • MemLoci

  • Referenced in 2 articles [sw24068]
  • MemLoci: predicting subcellular localization of membrane proteins in eukaryotes. MOTIVATION: Subcellular localization ... functional annotation of both globular and membrane proteins. In the absence of experimental data, protein ... subcellular localization are specifically trained on globular proteins and poorly perform on membrane proteins. RESULTS...
  • REPETITA

  • Referenced in 2 articles [sw35299]
  • solenoid repeats by discrete Fourier transform. Motivation: Proteins with solenoid repeats evolve more quickly than ... between a non-homologous set of globular proteins and proteins with solenoid repeats...
  • PRED-CLASS

  • Referenced in 5 articles [sw26873]
  • generalized classification of proteins into four distinct classes-transmembrane, fibrous, globular, and mixed-from information ... protein sequences spread among the four target classes (6 transmembrane, 10 fibrous, 13 globular ... predictions out of a set of 387 proteins (success rate approximately 96%) unambiguously assigned into...
  • ProtNet

  • Referenced in 1 article [sw29365]
  • captures the discrete and stochastic nature of protein interactions. In ProtNet, our simplified model ... diameter of an average globular protein. The protein filled lattice has an occupancy...
  • TMBETA-NET

  • Referenced in 2 articles [sw11339]
  • amino acid compositions of globular and outer membrane proteins have been systematically analyzed...
  • MEDELLER

  • Referenced in 2 articles [sw17378]
  • coordinate generation for membrane proteins. Motivation: Membrane proteins (MPs) are important drug targets but knowledge ... prediction methods are designed for globular, water-soluble proteins. However, we are now beginning...
  • HPMV

  • Referenced in 1 article [sw17017]
  • assess whether protein mutations affect the occurrence of sequence-architectural features (globular domains, targeting signals...
  • SOCKET

  • Referenced in 2 articles [sw35513]
  • unambiguous coiled-coil structures from the RCSB Protein Data Bank. Rather than searching for sequence ... helix-helix packing arrangements observed in globular domains. SOCKET unambiguously defines coiled-coil helix boundaries ... assigns heptad registers. Structures retrieved from the Protein Data Bank included parallel and anti-parallel...
  • MoRFpred

  • Referenced in 0 articles [sw25074]
  • computational methods that predict MoRFs from protein chains. Results: We introduce a new MoRF predictor ... that become ordered when bound to a globular partner. We show that our predicted...
  • R

  • Referenced in 8836 articles [sw00771]
  • R is a language and environment for statistical...
  • JAGS

  • Referenced in 214 articles [sw08040]
  • JAGS is Just Another Gibbs Sampler. It is...