
MCODE
 Referenced in 49 articles
[sw35748]
 Results: This paper describes a novel graph theoretic clustering algorithm, ”Molecular Complex Detection” (MCODE), that ... algorithm has the advantage over other graph clustering methods of having a directed mode that...

SymNMF
 Referenced in 15 articles
[sw12668]
 approximation of a similarity matrix for graph clustering. Nonnegative matrix factorization (NMF) provides a lower ... study an extended formulation for graph clustering called Symmetric NMF (SymNMF). In contrast ... clustering, justify SymNMF as a general graph clustering method, and discuss the strengths and shortcomings ... image segmentation support SymNMF as a graph clustering method that captures latent linear and nonlinear...

flexclust
 Referenced in 28 articles
[sw04583]
 visualization methods for cluster results (neighborhood graphs, convex cluster hulls, barcharts of centroids, ...), and bootstrap...

SAcluster
 Referenced in 10 articles
[sw06867]
 networks, sensor networks, biological networks, etc. Graph clustering has shown its effectiveness in analyzing ... visualizing large networks. The goal of graph clustering is to partition vertices in a large ... connectivity or neighborhood similarity. Many existing graph clustering methods mainly focus on the topological structures ... often heterogeneous. Recently, a new graph clustering algorithm, SAcluster, has been proposed which combines...

Tulip
 Referenced in 15 articles
[sw07464]
 most important capabilities of a graph visualization software called Tulip. This software has been developed ... order to experiment tools such as clustering, graph drawing and metrics coloring for the purpose ... Tulip’s characteristics are: a graph model which allows clustering with data sharing ... written in C++ and uses the Tulip graph library, the OpenGL library...

KeyGraph
 Referenced in 8 articles
[sw24377]
 forward in order to cluster the characteristics of human behavior, so as to detect ... realized through establishing KeyGraph and employing graph cluster algorithms. Firstly, the multidimension behavior features ... noise data were filtered and the undirected graph based on the characteristics ... human behavior was established. Finally graphclustering algorithm SCAN was applied to find...

graph2vec
 Referenced in 10 articles
[sw32340]
 graph analytics tasks such as graph classification and clustering require representing entire graphs as fixed ... downstream task such as graph classification, clustering and even seeding supervised representation learning approaches ... graph2vec achieves significant improvements in classification and clustering accuracies over substructure representation learning approaches ... competitive with stateoftheart graph kernels...

PSPIKE
 Referenced in 17 articles
[sw07072]
 systems, real, parallel on distributedmemory clusters, combinatorial graph algorithms...

Inccluster
 Referenced in 5 articles
[sw06866]
 networks, sensor networks, biological networks, etc. Graph clustering has shown its effectiveness in analyzing ... visualizing large networks. The goal of graph clustering is to partition vertices in a large ... connectivity or neighborhood similarity. Many existing graph clustering methods mainly focus on the topological structures ... often heterogeneous. Recently, a new graph clustering algorithm, SAcluster, has been proposed which combines...

Apache Spark
 Referenced in 64 articles
[sw28418]
 Spark: Spark is a fast and general cluster computing system for Big Data. It provides ... optimized engine that supports general computation graphs for data analysis. It also supports a rich...

CLUSTAG
 Referenced in 7 articles
[sw30040]
 CLUSTAG: hierarchical clustering and graph methods for selecting tag SNPs. Summary: Cluster and setcover...

JUNG
 Referenced in 11 articles
[sw12112]
 analysis, such as routines for clustering, decomposition, optimization, random graph generation, statistical analysis, and calculation...

LAMG
 Referenced in 34 articles
[sw06551]
 graphs arise in largescale computational applications such as semisupervised machine learning; spectral clustering ... presented, where $A$ is a graph Laplacian. LAMG’s run time and storage are empirically...

mixer
 Referenced in 4 articles
[sw12288]
 package mixer: Random graph clustering. Routines for the analysis (unsupervised clustering) of networks using MIXtures...

ProClust
 Referenced in 6 articles
[sw35761]
 ProClust: improved clustering of protein sequences with an extended graph ... based approach. Results: We extend a graphbased clustering algorithm which uses an asymmetric distance...

MapSets
 Referenced in 4 articles
[sw13776]
 MapSets: visualizing embedded and clustered graphs. In addition to objects and relationships between them, groups...

DPClus
 Referenced in 2 articles
[sw40253]
 densityperiphery based graph clustering software developed for detection of protein complexes in interaction networks ... this paper we present a graph clustering software called DPClus, which we have developed based ... isolate densely connected regions of a graph as clusters. Users have freedom to choose ... this software can be used for graph clustering in general but it mainly focuses...

IsoRankN
 Referenced in 11 articles
[sw08325]
 alignment tool based on spectral clustering on the induced graph of pairwise alignment scores. IsoRankN...

Pregel
 Referenced in 41 articles
[sw13416]
 that of its outgoing edges or mutate graph topology. This vertexcentric approach is flexible ... efficient, scalable and faulttolerant implementation on clusters of thousands of commodity computers ... result is a framework for processing large graphs that is expressive and easy to program...

SOMbrero
 Referenced in 3 articles
[sw14935]
 Using SOMbrero for clustering and visualizing graphs. Graphs have attracted a burst of attention ... enlighten the structure of the graph, performing clustering of the graph together with visualization...