
SnapPea
 Referenced in 163 articles
[sw06873]
 ChernSimons invariant (if orientable), homology, symmetry or isometry group, shortest geodesic, chirality...

EAT
 Referenced in 17 articles
[sw09167]
 computation of the first homology groups of some loop spaces, for which no algorithm ... designed to illustrate our methods of Effective Homology by a concrete experimental program...

HAP
 Referenced in 40 articles
[sw04870]
 homological algebra library for use with the GAP computer algebra system, and is still under ... computations related to the cohomology of groups. Both finite and infinite groups are handled, with ... some functions for computing homology of crossed modules and simplicial groups, and also some functions...

simpcomp
 Referenced in 24 articles
[sw06898]
 vectors, the face lattice, the automorphism group, (co)homology with explicit basis computation, intersection form...

Bianchi.gp
 Referenced in 3 articles
[sw33306]
 space and essential information about the group homology and equivariant Khomology of the Bianchi...

SVDComplexes
 Referenced in 2 articles
[sw27129]
 therefore the ranks of the homology groups. One way to do this would ... matrices or ranks of the homology groups...

HadamardSearch
 Referenced in 10 articles
[sw18675]
 matrices over a finite group G for which a homological model hG is known ... needed: 1. A matrix PR representing the group law on G. 2. A matrix...

fundamental
 Referenced in 1 article
[sw20954]
 program for computing fundamental groups, first homology groups, first homology groups mod a prime...

SHGO
 Referenced in 2 articles
[sw26954]
 combinatorial topology. SHGO approximates the homology groups of a complex built on a hypersurface homeomorphic...

BIGEBRA
 Referenced in 21 articles
[sw00078]
 group representations as the leading paradigm in forthcoming times. Ktheory, cohomology, entanglement, statistics...

quhomology
 Referenced in 1 article
[sw15133]
 calculates the Quandle, Rack and Degenerate Homology groups of Racks and Biracks (as well...

YASS
 Referenced in 5 articles
[sw22992]
 between homologous sequences, combined with a flexible hit criterion used to identify groups of seeds...

FoldRecC2C
 Referenced in 1 article
[sw40054]
 similarity between two groups of proteins from 2folds. However, the homology relationship among proteins...

PROMALS
 Referenced in 5 articles
[sw22476]
 that improves alignment quality by using additional homologs from PSIBLAST searches and secondary structure ... colored alignment augmented with information about sequence grouping, predicted secondary structures and positional conservation...

SCWRL4
 Referenced in 7 articles
[sw22393]
 using symmetry operators of the crystallographic space group. Accuracies as a function of electron density ... simple commandline interface, designed for homology modeling. To achieve higher accuracy, SCWRL4 is somewhat...

OrthoDB
 Referenced in 5 articles
[sw22979]
 free software. Orthology, refining the concept of homology, is the cornerstone of evolutionary comparative studies ... ortholog sequence divergence, copynumber profiles, sibling groups and gene architectures. We redesigned...

AceView
 Referenced in 3 articles
[sw23000]
 minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high ... coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression ... queried by meaningful words or groups of words as well as by most standard identifiers...

ESPript
 Referenced in 0 articles
[sw35914]
 homology score by columns of residues and can sort this calculation by groups of sequences...

PRALINE
 Referenced in 2 articles
[sw16248]
 from database homology searches to generate a homologyextended multiple alignment. PRALINE also provides ... easy figure generation for publications. The grouping of sequences, on which the alignment is based...

StepBrothers
 Referenced in 1 article
[sw34333]
 faulty in that the inferred relatedness of homologous sequences across regions divided by recombinant events ... struggle. For example, we demonstrate that a group of human immunodeficiency type 1 recombinant viruses...