• Wenxiang

  • Referenced in 15 articles [sw16645]
  • constituent amino acid residues in an α-helix, and is particularly useful for studying...
  • COMPASS

  • Referenced in 9 articles [sw23109]
  • various Rossmann-type folds and between various helix-turn-helix-containing families. The potential value...
  • Helanal

  • Referenced in 5 articles [sw29681]
  • then characterises the overall geometry of each helix as being linear, curved or kinked ... twist and rise, virtual torsion angle, local helix origins and bending angles between successive local ... helix axes. Even helices with large radius of curvature are unambiguously identified as being linear ... also be used to differentiate a kinked helix and other motifs, such as helix-loop...
  • SOSUI

  • Referenced in 8 articles [sw35979]
  • corresponding value for the transmembrane helix prediction was 97%. AVAILABILITY: The system SOSUI is available...
  • Kink-detector

  • Referenced in 3 articles [sw29680]
  • which incorporates the cylindrical nature of the helix. Our focus is to detect a “kink ... change in the axial direction of the helix. We propose a statistical model ... straight (alpha)-helix and derive the maximum likelihood estimation procedure. The cylinder is an accepted ... detect a kink location along the helix. Unlike classical change point problems, the change...
  • PSOFuzzySVM-TMH

  • Referenced in 3 articles [sw27664]
  • PSOFuzzySVM-TMH: identification of transmembrane helix segments using ensemble feature space by incorporated fuzzy support ... proteins describes the number of transmembrane (TM) helix segments and its orientation. However, owing ... recognized structures, the identification of TM helix and its topology through experimental methods is laborious ... throughput. In order to identify TM helix segments reliably, accurately, and effectively from topogenic sequences...
  • GeneFizz

  • Referenced in 3 articles [sw10919]
  • physics-based structural segmentation between helix and coil domains (as provided by the classical helix...
  • SOCKET

  • Referenced in 2 articles [sw35513]
  • coiled coils from the great majority of helix-helix packing arrangements observed in globular domains ... SOCKET unambiguously defines coiled-coil helix boundaries, oligomerisation states and helix orientations, and also assigns...
  • PLMLA

  • Referenced in 4 articles [sw36907]
  • acetyllysine prefers to occur at the helix region of protein. The upstream residues away from...
  • HIT

  • Referenced in 1 article [sw35512]
  • Helix Interaction Tool (HIT): a web-based tool for analysis of helix-helix interactions ... proteins. In many proteins, helixhelix interactions can be critical to establishing protein conformation (folding ... rules that guide helixhelix interaction has been elusive. In order to gain further insight ... into the helixhelix interface, we have developed a comprehensive package of tools for analyzing...
  • PSF Generator

  • Referenced in 3 articles [sw16430]
  • Cosine”, ”Circular-Pupil”, ”Astigmatism”, ”Oriented-Gaussian”, ”Double-Helix”. Optical Transfer Function generated in the Fourier...
  • HELIQUEST

  • Referenced in 2 articles [sw35348]
  • amino acid composition of an α-helix and screens databank to identify protein segments possessing...
  • TRAJELIX

  • Referenced in 1 article [sw10942]
  • global and local structural properties of the helix can help study possible intramolecular and intermolecular ... changes in the helix packing of alpha-helical membrane proteins, as shown here...
  • TMKink

  • Referenced in 1 article [sw29683]
  • TMKink: A method to predict transmembrane helix kinks. A hallmark of membrane protein structure ... more structural data will allow for better helix distortion predictors with increased coverage...
  • Kink Finder

  • Referenced in 1 article [sw29682]
  • Based on the local structure of the helix kink, it identifies a residue...
  • Macaulay2

  • Referenced in 1904 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • Maple

  • Referenced in 5363 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 6337 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13460 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9810 articles [sw00771]
  • R is a language and environment for statistical...