Mathematical software

DIADEM
Referenced in 3 articles [sw27494]
with implicitly structured data, spread over hundreds of thousands of sites, hidden deep behind search ... forms, or siloed in marketplaces, only accessible as HTML. Automatic extraction of structured data...

ImpUNITY
Referenced in 4 articles [sw01574]
tuple space. Additionally, we bring structure in the tuple space and the state spaces ... them to be hidden and making it possible to restrict the access rights of different...

HHpred
Referenced in 7 articles [sw17271]
first to implement pairwise comparison of profile hidden Markov models (HMMs). It allows to search ... local or global alignment and scoring secondary structure similarity. HHpred can produce pairwise query-template ... search results, as well as 3D structural models that are calculated by the MODELLER software ... regulator from Bacillus subtilis. HHpred can be accessed at http://protevo.eb.tuebingen.mpg.de/hhpred....

HHrep
Referenced in 3 articles [sw22482]
based on the pairwise comparison of profile hidden Markov models (HMMs). Its main strength ... only be detected from their structures. Examples include sequences with beta-propellor fold, ferredoxin-like ... betaalphabetaalpha or betaalpha unit. HHrep can be accessed at http://hhrep.tuebingen.mpg.de...

EuGene
Referenced in 1 article [sw28666]
significant support. However, their dispersion requires the access to different tools and online services ... content, hidden stop codons, repetitions, deleterious sites, protein primary, secondary and tertiary structures, gene orthologs...

DIADEM